Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq153649 244 3e-62 seq74092 114 3e-23 seq38152 114 3e-23 seq18435 113 1e-22 seq105318 104 6e-20 seq50606 104 6e-20 seq4652 93.3 1e-16 seq137420 78.8 2e-12 seq95988 73.4 1e-10 >seq153649 Length=14578 Score = 244 bits (270), Expect = 3e-62 Identities = 306/420 (73%), Gaps = 21/420 (5%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 14174 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 14233 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 14234 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 14293 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||||||| || | ||||| || | || Sbjct 14294 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT----ATAAC--AC 14347 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | ||||||| |||||||||||| |||| || |||||| || || | | Sbjct 14348 TTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 14407 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| ||||||||||||||||||||||| | |||||||| | | | | | Sbjct 14408 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 14467 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | | || || |||| ||||||||||||||||||| | | Sbjct 14468 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCA 14512 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 14513 TTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 14572 >seq74092 Length=2799 Score = 114 bits (126), Expect = 3e-23 Identities = 157/221 (71%), Gaps = 15/221 (7%) Strand=Plus/Minus Query 198 ACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGC 257 ||||||| |||||||||||| |||| || |||||| || || | || ||||||| | Sbjct 2773 ACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCC 2714 Query 258 TGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAG 317 |||||||||||||||||||||| | |||||||| | | | | | | | | || Sbjct 2713 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAA---AG 2657 Query 318 CAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGT 377 || |||| ||||||||||||||||||| | | ||||||| ||| Sbjct 2656 ATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGT 2609 Query 378 TCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 |||||| | ||||||||||||||| | |||| |||||| Sbjct 2608 TCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 2568 >seq38152 Length=2419 Score = 114 bits (126), Expect = 3e-23 Identities = 200/289 (69%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 16 TCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACG 75 ||||||||| || || ||||||| | || | ||||||| ||| || |||||| Sbjct 1779 TCTTCACAGACATGTCTATTTCACCAAAACTTTCTTTGAGACAGTGCCTAGATTGTTACG 1720 Query 76 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTG 135 || || |||| ||| ||||||||| |||||||||||| || ||||||||| |||||| | Sbjct 1719 CCTTTTGTGCGGGTTGGAACTTACTTGACAAGGAATTTTGCAACCTTAGGATCGTTATAG 1660 Query 136 TTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC-GTTAGC---TAACCCCAT 191 ||| | |||| || ||| |||||||| | | || | | || | | | ||| | Sbjct 1659 TTATGATCGCCATTCACCAGGGCTTCGGTAGCCATCTCCCCTGTCATCAAGTCACCAACT 1600 Query 192 CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 251 || ||||| || ||| || |||||||| ||| |||| | ||| | |||| Sbjct 1599 TCCTTGACCTTTCGACACTAGGTAGGCGTCAAGCCCCATACATGGTCTTACAACTTTGTG 1540 Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 || | ||||||| |||||| | || |||||||| || ||||| Sbjct 1539 GATACTTTTGTTTTTGGTAAACAATTGCCTAGGCCTGGTCACTGCGACC 1491 >seq18435 Length=19846 Score = 113 bits (124), Expect = 1e-22 Identities = 192/274 (70%), Gaps = 7/274 (3%) Strand=Plus/Minus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 ||||||||||||| || || ||||||| || ||| ||| | ||| |||| Sbjct 15719 CTGCATCTTCACAAACATATCTATTTCACCAAGCCTCTCCA--AGATATTGCCTAAATCG 15662 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 |||| | ||| |||||||| | ||||| | |||||||||||| ||||||||| ||||| Sbjct 15661 TTACATCTTTCATGCAGGTCAAAGCTTACTCAACAAGGAATTTCACTACCTTAGAACCGT 15602 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC-GTTAGC---TAAC 186 ||| |||||||| || |||||| | ||||||||| | | | | || | | | || Sbjct 15601 TATAATTACGGCCACCATTTACCAGAGCTTCGATCGTCAATTCCCCTGTCATCAAGTCAC 15542 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACA-CCCTATACGTCCACTTTCGTG 245 | | || ||||| || || ||||| |||| || ||| ||| | ||| | Sbjct 15541 CAACTTCCTTGACCTTTCGACAATGGGCAAGCGTATCAGCCCCATATATGACCTTATGAC 15482 Query 246 TTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 ||||||||| || ||||||| ||||||| ||| Sbjct 15481 TTTGCAGAGACCTATGTTTTTGGTAAACAGCCGC 15448 >seq105318 Length=3320 Score = 104 bits (114), Expect = 6e-20 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 16 TCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACG 75 |||||| || || || ||||||| | ||| ||||| | || || |||||| Sbjct 2828 TCTTCATAGACATGTCTATTTCACCAAACCTCTCTCCGAGACGGTACCTAGATTGTTACG 2769 Query 76 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTG 135 || || |||| ||| |||||||||| |||||||||||| |||||||||||| |||||| | Sbjct 2768 CCTTTTGTGCGGGTTGGAACTTACCTGACAAGGAATTTTGCTACCTTAGGATCGTTATAG 2709 Query 136 TTACGGCCGCCGTTTACCGGGGCTT 160 ||| | ||| |||| | ||||||| Sbjct 2708 TTATGACCGTCGTTCAGTGGGGCTT 2684 >seq50606 Length=2049 Score = 104 bits (114), Expect = 6e-20 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 16 TCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACG 75 |||||| || || || ||||||| | ||| |||| | ||| || |||||| Sbjct 493 TCTTCATAGACATGTCTATTTCACCAAACCTCTCTCCGAGAGGGTGCCTAGATTGTTACG 552 Query 76 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTG 135 || ||| ||| ||| |||||||||| |||||||||||| |||||||||||| |||||| | Sbjct 553 CCTTTCATGCGGGTTGGAACTTACCTGACAAGGAATTTTGCTACCTTAGGATCGTTATAG 612 Query 136 TTACGGCCGCCGTTTACCGGGGCTT 160 ||| | ||| |||| || |||||| Sbjct 613 TTATGACCGTCGTTCACTAGGGCTT 637 >seq4652 Length=12224 Score = 93.3 bits (102), Expect = 1e-16 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||||| | ||| |||||||| | ||||| | |||||||||||| | ||||||| | Sbjct 5048 ATCGTTACGTCTTTCATGCAGGTCAAAGCTTACTCAACAAGGAATTTCACGACCTTAGAA 4989 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 ||||||| |||| ||| || |||||| ||||||||| Sbjct 4988 CCGTTATAATTACAGCCACCATTTACCAACGCTTCGATC 4950 >seq137420 Length=3656 Score = 78.8 bits (86), Expect = 2e-12 Identities = 61/73 (84%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||| ||||||| ||||||| ||| ||||||||| ||||| |||||| |||||||||||| Sbjct 2053 ATCATTACGCCTTTCGTGCGGGTTGGAACTTACTTGACAACGAATTTTGCTACCTTAGGA 2112 Query 127 CCGTTATTGTTAC 139 ||| | ||||| Sbjct 2113 TTGTTGTAGTTAC 2125 >seq95988 Length=5042 Score = 73.4 bits (80), Expect = 1e-10 Identities = 75/98 (77%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 || |||| ||| ||| ||| ||||||||||||||||| || ||||| | ||| |||| | Sbjct 4803 ATTGTTATGCCTTTCATGCGGGTCGGAACTTACCCGATAATAAATTTTGTTACATTAGAA 4862 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGAT 164 || |||| |||| | ||||||| ||| |||||| Sbjct 4863 CCATTATAGTTATAATCACCGTTTATTAGGGTTTCGAT 4900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1258146722048