Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1
_202015-09-10] 210,444 sequences; 539,624,286 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq153649 244 3e-62
seq74092 114 3e-23
seq38152 114 3e-23
seq18435 113 1e-22
seq105318 104 6e-20
seq50606 104 6e-20
seq4652 93.3 1e-16
seq137420 78.8 2e-12
seq95988 73.4 1e-10
>seq153649
Length=14578
Score = 244 bits (270), Expect = 3e-62
Identities = 306/420 (73%), Gaps = 21/420 (5%)
Strand=Plus/Plus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
||| | |||||||||| | || ||||||||||| | ||| | |||||||||| ||
Sbjct 14174 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 14233
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 14234 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 14293
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186
| |||| ||||| ||||||||||||||||||||| || | ||||| || | ||
Sbjct 14294 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT----ATAAC--AC 14347
Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246
| | ||||||| |||||||||||| |||| || |||||| || || | |
Sbjct 14348 TTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 14407
Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306
| ||||||| ||||||||||||||||||||||| | |||||||| | | | | |
Sbjct 14408 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 14467
Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366
| | | || || |||| ||||||||||||||||||| | |
Sbjct 14468 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCA 14512
Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426
||||||| |||||||| ||||| |||| || ||| ||||||||||||| | ||||
Sbjct 14513 TTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 14572
>seq74092
Length=2799
Score = 114 bits (126), Expect = 3e-23
Identities = 157/221 (71%), Gaps = 15/221 (7%)
Strand=Plus/Minus
Query 198 ACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGC 257
||||||| |||||||||||| |||| || |||||| || || | || ||||||| |
Sbjct 2773 ACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCC 2714
Query 258 TGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAG 317
|||||||||||||||||||||| | |||||||| | | | | | | | | ||
Sbjct 2713 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAA---AG 2657
Query 318 CAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGT 377
|| |||| ||||||||||||||||||| | | ||||||| |||
Sbjct 2656 ATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGT 2609
Query 378 TCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418
|||||| | ||||||||||||||| | |||| ||||||
Sbjct 2608 TCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 2568
>seq38152
Length=2419
Score = 114 bits (126), Expect = 3e-23
Identities = 200/289 (69%), Gaps = 4/289 (1%)
Strand=Plus/Minus
Query 16 TCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACG 75
||||||||| || || ||||||| | || | ||||||| ||| || ||||||
Sbjct 1779 TCTTCACAGACATGTCTATTTCACCAAAACTTTCTTTGAGACAGTGCCTAGATTGTTACG 1720
Query 76 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTG 135
|| || |||| ||| ||||||||| |||||||||||| || ||||||||| |||||| |
Sbjct 1719 CCTTTTGTGCGGGTTGGAACTTACTTGACAAGGAATTTTGCAACCTTAGGATCGTTATAG 1660
Query 136 TTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC-GTTAGC---TAACCCCAT 191
||| | |||| || ||| |||||||| | | || | | || | | | ||| |
Sbjct 1659 TTATGATCGCCATTCACCAGGGCTTCGGTAGCCATCTCCCCTGTCATCAAGTCACCAACT 1600
Query 192 CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 251
|| ||||| || ||| || |||||||| ||| |||| | ||| | ||||
Sbjct 1599 TCCTTGACCTTTCGACACTAGGTAGGCGTCAAGCCCCATACATGGTCTTACAACTTTGTG 1540
Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300
|| | ||||||| |||||| | || |||||||| || |||||
Sbjct 1539 GATACTTTTGTTTTTGGTAAACAATTGCCTAGGCCTGGTCACTGCGACC 1491
>seq18435
Length=19846
Score = 113 bits (124), Expect = 1e-22
Identities = 192/274 (70%), Gaps = 7/274 (3%)
Strand=Plus/Minus
Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70
||||||||||||| || || ||||||| || ||| ||| | ||| ||||
Sbjct 15719 CTGCATCTTCACAAACATATCTATTTCACCAAGCCTCTCCA--AGATATTGCCTAAATCG 15662
Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130
|||| | ||| |||||||| | ||||| | |||||||||||| ||||||||| |||||
Sbjct 15661 TTACATCTTTCATGCAGGTCAAAGCTTACTCAACAAGGAATTTCACTACCTTAGAACCGT 15602
Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC-GTTAGC---TAAC 186
||| |||||||| || |||||| | ||||||||| | | | | || | | | ||
Sbjct 15601 TATAATTACGGCCACCATTTACCAGAGCTTCGATCGTCAATTCCCCTGTCATCAAGTCAC 15542
Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACA-CCCTATACGTCCACTTTCGTG 245
| | || ||||| || || ||||| |||| || ||| ||| | ||| |
Sbjct 15541 CAACTTCCTTGACCTTTCGACAATGGGCAAGCGTATCAGCCCCATATATGACCTTATGAC 15482
Query 246 TTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279
||||||||| || ||||||| ||||||| |||
Sbjct 15481 TTTGCAGAGACCTATGTTTTTGGTAAACAGCCGC 15448
>seq105318
Length=3320
Score = 104 bits (114), Expect = 6e-20
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 16 TCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACG 75
|||||| || || || ||||||| | ||| ||||| | || || ||||||
Sbjct 2828 TCTTCATAGACATGTCTATTTCACCAAACCTCTCTCCGAGACGGTACCTAGATTGTTACG 2769
Query 76 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTG 135
|| || |||| ||| |||||||||| |||||||||||| |||||||||||| |||||| |
Sbjct 2768 CCTTTTGTGCGGGTTGGAACTTACCTGACAAGGAATTTTGCTACCTTAGGATCGTTATAG 2709
Query 136 TTACGGCCGCCGTTTACCGGGGCTT 160
||| | ||| |||| | |||||||
Sbjct 2708 TTATGACCGTCGTTCAGTGGGGCTT 2684
>seq50606
Length=2049
Score = 104 bits (114), Expect = 6e-20
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 16 TCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACG 75
|||||| || || || ||||||| | ||| |||| | ||| || ||||||
Sbjct 493 TCTTCATAGACATGTCTATTTCACCAAACCTCTCTCCGAGAGGGTGCCTAGATTGTTACG 552
Query 76 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTG 135
|| ||| ||| ||| |||||||||| |||||||||||| |||||||||||| |||||| |
Sbjct 553 CCTTTCATGCGGGTTGGAACTTACCTGACAAGGAATTTTGCTACCTTAGGATCGTTATAG 612
Query 136 TTACGGCCGCCGTTTACCGGGGCTT 160
||| | ||| |||| || ||||||
Sbjct 613 TTATGACCGTCGTTCACTAGGGCTT 637
>seq4652
Length=12224
Score = 93.3 bits (102), Expect = 1e-16
Identities = 80/99 (81%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||||||||| | ||| |||||||| | ||||| | |||||||||||| | ||||||| |
Sbjct 5048 ATCGTTACGTCTTTCATGCAGGTCAAAGCTTACTCAACAAGGAATTTCACGACCTTAGAA 4989
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165
||||||| |||| ||| || |||||| |||||||||
Sbjct 4988 CCGTTATAATTACAGCCACCATTTACCAACGCTTCGATC 4950
>seq137420
Length=3656
Score = 78.8 bits (86), Expect = 2e-12
Identities = 61/73 (84%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||| ||||||| ||||||| ||| ||||||||| ||||| |||||| ||||||||||||
Sbjct 2053 ATCATTACGCCTTTCGTGCGGGTTGGAACTTACTTGACAACGAATTTTGCTACCTTAGGA 2112
Query 127 CCGTTATTGTTAC 139
||| | |||||
Sbjct 2113 TTGTTGTAGTTAC 2125
>seq95988
Length=5042
Score = 73.4 bits (80), Expect = 1e-10
Identities = 75/98 (77%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
|| |||| ||| ||| ||| ||||||||||||||||| || ||||| | ||| |||| |
Sbjct 4803 ATTGTTATGCCTTTCATGCGGGTCGGAACTTACCCGATAATAAATTTTGTTACATTAGAA 4862
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGAT 164
|| |||| |||| | ||||||| ||| ||||||
Sbjct 4863 CCATTATAGTTATAATCACCGTTTATTAGGGTTTCGAT 4900
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1258146722048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |