Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq153649 273 5e-71 seq38152 178 3e-42 seq105318 174 3e-41 seq18435 159 7e-37 seq50606 156 9e-36 seq74092 147 5e-33 seq43684 105 1e-20 seq137420 102 2e-19 seq106173 100 6e-19 seq95988 100 6e-19 seq4652 96.9 7e-18 seq140962 91.5 3e-16 seq172709 87.8 4e-15 seq123671 75.2 2e-11 seq181104 73.4 8e-11 >seq153649 Length=14578 Score = 273 bits (302), Expect = 5e-71 Identities = 279/364 (77%), Gaps = 20/364 (5%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 14174 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 14233 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 14234 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 14293 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| ||||||| |||| ||| | |||| Sbjct 14294 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATAAC 14345 Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || |||| |||||||||||||||||||| ||||| ||||||||||| || | | Sbjct 14346 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 14405 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 14406 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 14465 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 14466 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 14525 Query 349 CTTA 352 |||| Sbjct 14526 CTTA 14529 >seq38152 Length=2419 Score = 178 bits (196), Expect = 3e-42 Identities = 235/323 (73%), Gaps = 5/323 (2%) Strand=Plus/Minus Query 10 TCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACG 69 ||||||| | || | |||||||| | || | ||||||||||||| | || |||||| Sbjct 1779 TCTTCACAGACATGTCTATTTCACCAAAACTTTCTTTGAGACAGTGCCTAGATTGTTACG 1720 Query 70 CCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAG 129 ||||| |||||||| ||||||||| |||||||||||| || ||||||||| |||||||| Sbjct 1719 CCTTTTGTGCGGGTTGGAACTTACTTGACAAGGAATTTTGCAACCTTAGGATCGTTATAG 1660 Query 130 TTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAGATC 185 ||| | |||| || || |||||| || | || | | | || | || | Sbjct 1659 TTATGATCGCCATTCACCAGGGCTTCGGTAGCCATCTCCCCTGTCATCAAGTCACCAACT 1600 Query 186 CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCA 245 |||| ||||| | ||| || |||||||| || |||||| ||||| | |||| | Sbjct 1599 TCCTTGACCTTTCGACACTAGGTAGGCGTCAAGCCCCATACATGGTCTTACAACTTTGTG 1540 Query 246 GAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG-GCCTGTCATAGAC 304 || || | ||||||||||||||| | || | ||||| || ||||| || | || | Sbjct 1539 GATACTTTTGTTTTTGGTAAACAATTGCCTAGGCCTGGTCACTGCGACCCCTTTATGGGG 1480 Query 305 AGGCACCCCTTCTCCCTAAGTTA 327 |||||||||||||| | |||||| Sbjct 1479 AGGCACCCCTTCTCTCGAAGTTA 1457 >seq105318 Length=3320 Score = 174 bits (192), Expect = 3e-41 Identities = 212/286 (74%), Gaps = 5/286 (2%) Strand=Plus/Minus Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 106 ||||| || || | || ||||||||||| |||||||| |||||||||| ||||||||||| Sbjct 2791 GAGACGGTACCTAGATTGTTACGCCTTTTGTGCGGGTTGGAACTTACCTGACAAGGAATT 2732 Query 107 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCT 166 | |||||||||||| ||||||||||| | ||| |||| | |||||||| || | ||| Sbjct 2731 TTGCTACCTTAGGATCGTTATAGTTATGACCGTCGTTCAGTGGGGCTTTGGTAGCCAGCT 2672 Query 167 TCGAT-TGCTC---TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCT 222 | | | || | || | |||| ||||| ||||| || ||| |||| | || Sbjct 2671 CCCTTGTCATCAAGTCACCAACTTCCTTGACCTTTCAGCATTAGGTAGGTGTCAACCCCC 2612 Query 223 ATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTA 282 |||||| ||||| | |||| | || || | ||||||||||||||||| || |||| Sbjct 2611 ATACATGGTCTTACAACTTTGACGATACTTATGTTTTTGGTAAACAGTTGCCCAAGCCTG 2552 Query 283 TTCTCTGCG-GCCTGTCATAGACAGGCACCCCTTCTCCCTAAGTTA 327 || || || || | || | ||| |||||||||||| |||||| Sbjct 2551 GTCACTACGTCCCCTTTATGGGGAGGTACCCCTTCTCCCAAAGTTA 2506 >seq18435 Length=19846 Score = 159 bits (176), Expect = 7e-37 Identities = 257/363 (71%), Gaps = 21/363 (6%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 || || |||||||||| || | |||||||| || || | ||| | |||| || Sbjct 15723 TAGCCTGCATCTTCACAAACATATCTATTTCACCAAGCCTCTCCA--AGATATTGCCTAA 15666 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||| ||||| ||| |||| | ||||| | |||||||||||| ||||||||| | Sbjct 15665 ATCGTTACATCTTTCATGCAGGTCAAAGCTTACTCAACAAGGAATTTCACTACCTTAGAA 15606 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT--------AAGTTCACTG-CTTCGAT 171 |||||||| |||||||| || ||||| | |||| || | | ||| | || | Sbjct 15605 CCGTTATAATTACGGCCACCATTTACCAGAGCTTCGATCGTCAATTCCCCTGTCATCAAG 15546 Query 172 TGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCG--TCAGCTCCTATACATC 229 | | | ||| |||| ||||| | || ||||| ||| ||||| || ||| || Sbjct 15545 T-CACCAAC----TTCCTTGACCTTTCGACAATGGGCAAGCGTATCAGC-CCCATATATG 15492 Query 230 GTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTA--TTCTC 287 ||| ||||| ||||| |||| |||||||||||||||| |||| || ||| | || Sbjct 15491 ACCTTATGACTTTGCAGAGACCTATGTTTTTGGTAAACAGCCGCTCAGGACTAGTTCCTA 15432 Query 288 TGCGGCCTGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTT 347 || || | || ||||| |||||||||| |||||| |||| |||||| | |||| Sbjct 15431 TGACCCCCTTTATGAGGAGGCATCCCTTCTCCCAAAGTTATGGGGCTATTTTGTCAAGTT 15372 Query 348 CCT 350 ||| Sbjct 15371 CCT 15369 >seq50606 Length=2049 Score = 156 bits (172), Expect = 9e-36 Identities = 208/286 (73%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 106 |||| ||||| | || |||||||||||| ||||||| |||||||||| ||||||||||| Sbjct 530 GAGAGGGTGCCTAGATTGTTACGCCTTTCATGCGGGTTGGAACTTACCTGACAAGGAATT 589 Query 107 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCT 166 | |||||||||||| ||||||||||| | ||| |||| ||| |||||| || | || Sbjct 590 TTGCTACCTTAGGATCGTTATAGTTATGACCGTCGTTCACTAGGGCTTTGGTAGCCAACT 649 Query 167 TCGAT-TGCTC---TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCT 222 | | | || | || | |||| ||||| ||||| || ||| |||| | || Sbjct 650 CCCTTGTCATCAAGTCACCAACTTCCTTGACCTTTCAGCATTAGGTAGGTGTCAACCCCC 709 Query 223 ATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTA 282 |||||| ||||| | |||| | || || | ||||||| || |||||| || |||| Sbjct 710 ATACATGGTCTTACAACTTTGTTGATACTTATGTTTTTAGTGAACAGTTGCCCAAGCCTG 769 Query 283 TTCTCTGCG-GCCTGTCATAGACAGGCACCCCTTCTCCCTAAGTTA 327 || || || || | || | ||| ||| |||||||| |||||| Sbjct 770 GTCACTACGTCCCCTTTATGGGGAGGTACCACTTCTCCCAAAGTTA 815 >seq74092 Length=2799 Score = 147 bits (162), Expect = 5e-33 Identities = 153/200 (77%), Gaps = 12/200 (6%) Strand=Plus/Minus Query 177 TAACAGATCCCCTTA--ACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTT 234 ||||| || |||| |||||||||||||||||||| ||||| ||||||||||| || Sbjct 2790 TAACACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTT 2731 Query 235 GCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC 294 | |||||||||| ||||||||||| |||||||||||| ||| | | ||| || Sbjct 2730 ACCACTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCT 2671 Query 295 TGTC------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGA 344 | | | ||| || |||||||||||||| ||||||||||||||||||||||| Sbjct 2670 TTCCTAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGA 2611 Query 345 GTTCCTTAACAATAGTTCTC 364 ||||||| || |||||| Sbjct 2610 GTTCCTTCGACATGGTTCTC 2591 >seq43684 Length=4082 Score = 105 bits (116), Expect = 1e-20 Identities = 106/136 (78%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 220 CCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGC 279 || |||||| ||||| | | || || || | ||||||||||||||||||||||||||||| Sbjct 3349 CCCATACATGGTCTTACAATTTTGCGGAGAACTGTGTTTTTGGTAAACAGTCGCTTGGGC 3408 Query 280 CTATTCTCTGCGGCCTGTCATAG---ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCAT 336 | || ||| | || | | | | |||||||||||||| | ||||||| ||| || Sbjct 3409 AT-GTCACTGGGACCCCCCTTTGTGAAGAGGCACCCCTTCTCTCGAAGTTACAGGGCTAT 3467 Query 337 TTTGCCGAGTTCCTTA 352 |||||||| ||||||| Sbjct 3468 TTTGCCGACTTCCTTA 3483 >seq137420 Length=3656 Score = 102 bits (112), Expect = 2e-19 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||| ||||||||||||||||||| ||||||||| ||||| |||||| |||||||||||| Sbjct 2053 ATCATTACGCCTTTCGTGCGGGTTGGAACTTACTTGACAACGAATTTTGCTACCTTAGGA 2112 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC--- 176 ||| ||||||| ||| || | ||||| | | | |||| | | || Sbjct 2113 TTGTTGTAGTTACAAATGCCATTCATCAAGGCTTTAATCACCAACTTCTCTATCATCAGG 2172 Query 177 TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGC 236 | || | | |||||||| | | || | ||| | | | | |||||| || |||| | Sbjct 2173 TCACCAACCTCCTTAACCATTCGCCAATGAGCAAACATTAACCCCTATATATGATCTTAC 2232 Query 237 GACTTAGCAGAAACCTGTGTTTTTGGTAAACAGT 270 |||| ||||| || ||| ||||||||||| ||| Sbjct 2233 AACTTTGCAGAGACATGTATTTTTGGTAAATAGT 2266 >seq106173 Length=7727 Score = 100 bits (110), Expect = 6e-19 Identities = 105/136 (77%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 220 CCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGC 279 || |||||| ||||| | | || || | | ||||||||||||||||||||||||||||| Sbjct 2432 CCCATACATGGTCTTACAATTTTGCGAAGAACTGTGTTTTTGGTAAACAGTCGCTTGGGC 2491 Query 280 CTATTCTCTGCGGCCTGTCATAG---ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCAT 336 | || ||| | || | | | | |||||||||||||| | ||||||| ||| || Sbjct 2492 AT-GTCACTGGGACCCCCCTTTGTGAAGAGGCACCCCTTCTCTCGAAGTTACAGGGCTAT 2550 Query 337 TTTGCCGAGTTCCTTA 352 |||||||| ||||||| Sbjct 2551 TTTGCCGACTTCCTTA 2566 >seq95988 Length=5042 Score = 100 bits (110), Expect = 6e-19 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 42 TTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAG 101 || |||| | |||| |||||| |||| ||||||| ||||||||||||||||||||| || Sbjct 4784 TTTTTGATATAGTGTCCAAATTGTTATGCCTTTCATGCGGGTCGGAACTTACCCGATAAT 4843 Query 102 GAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 154 ||||| | ||| |||| ||| ||||||||| | ||||||| | ||| || Sbjct 4844 AAATTTTGTTACATTAGAACCATTATAGTTATAATCACCGTTTATTAGGGTTT 4896 >seq4652 Length=12224 Score = 96.9 bits (106), Expect = 7e-18 Identities = 153/215 (71%), Gaps = 7/215 (3%) Strand=Plus/Minus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 ||||||||||| ||||| ||| |||| | ||||| | |||||||||||| | ||||||| Sbjct 5050 AAATCGTTACGTCTTTCATGCAGGTCAAAGCTTACTCAACAAGGAATTTCACGACCTTAG 4991 Query 119 GACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT--AAGTTCACTGCTTCGAT--TGC 174 ||||||||| |||| ||| || ||||| |||| | ||| | | || | | Sbjct 4990 AACCGTTATAATTACAGCCACCATTTACCAACGCTTCGATCGTCAATTCCTCTGTCATCA 4931 Query 175 TCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCG--TCAGCTCCTATACATCGTC 232 | || | |||| ||||| || ||||| ||| ||| | || ||| || | | Sbjct 4930 AGTCACCAACTTCCTTGACCTTTTGACAATGGGCAAGCGTATCAAC-CCCATATATGGCC 4872 Query 233 TTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAAC 267 || ||||| ||||| |||| |||||||||||||| Sbjct 4871 TTATGACTTTGCAGAGACCTATGTTTTTGGTAAAC 4837 >seq140962 Length=2811 Score = 91.5 bits (100), Expect = 3e-16 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCC--GACAAGGAATTTCGCTACCTTAG 118 ||| |||||||||| |||||||| ||||||||| ||||| |||||| ||||||||| Sbjct 2078 ATCATTACGCCTTTTGTGCGGGTTGGAACTTACTTTTGACAACGAATTTTACTACCTTAG 2137 Query 119 GACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC- 176 || ||| ||||||| | ||| || | ||||| | | | |||| | | || Sbjct 2138 GATTGTTGTAGTTACAACTGCCATTCATCAAGGCTTCAATCACCAACTTCTCTATCATCA 2197 Query 177 --TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTT 234 | || | | |||||||||| | | | ||| | | ||| |||||| || |||| Sbjct 2198 GGTCACCAACCTCCTTAACCTTTCGCTAATGAGCAAACATTAGCCCCTATATATGATCTT 2257 Query 235 GCGACTTAGCAGAAACCTGTGTTTTTGGTAAA 266 | |||| ||||| || ||| ||||||||||| Sbjct 2258 TCAACTTTGCAGAGACATGTATTTTTGGTAAA 2289 >seq172709 Length=2738 Score = 87.8 bits (96), Expect = 4e-15 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 46 TGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAAT 105 ||||| ||| ||| ||| ||| || |||| || |||| |||||||| |||||||||| Sbjct 2179 TGAGATGGTGGCCAGATCATTATGCTTTTCATGTGGGTTAGAACTTACATGACAAGGAAT 2120 Query 106 TTCGCTACCTTAGGACCGTTATA 128 || |||||||||||||||||||| Sbjct 2119 TTTGCTACCTTAGGACCGTTATA 2097 >seq123671 Length=1211 Score = 75.2 bits (82), Expect = 2e-11 Identities = 57/65 (88%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 62 TCGTTACGCCTTTCGTGCGGGTCGGA-ACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 || |||| | |||| || ||||||| ||||||||||||||||||||| ||||||||||| Sbjct 127 TCATTACACTTTTCATG-GGGTCGGGTACTTACCCGACAAGGAATTTCACTACCTTAGGA 69 Query 121 CCGTT 125 ||||| Sbjct 68 CCGTT 64 >seq181104 Length=17826 Score = 73.4 bits (80), Expect = 8e-11 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 53 GTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTA 112 ||| ||| ||| ||| | ||| || ||||| ||||||| ||||| |||||| |||| Sbjct 2809 GTGGCCAGATCATTATGTTTTTTATGTGGGTCAAAACTTACATGACAAAGAATTTTGCTA 2750 Query 113 CCTTAGGACCGTTATAGTTA 132 |||||||||||||||| ||| Sbjct 2749 CCTTAGGACCGTTATAATTA 2730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1060164242944