Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1
_202015-09-10] 210,444 sequences; 539,624,286 total letters
Query= AAMG01000753.1
Length=364
Score E
Sequences producing significant alignments: (Bits) Value
seq153649 273 5e-71
seq38152 178 3e-42
seq105318 174 3e-41
seq18435 159 7e-37
seq50606 156 9e-36
seq74092 147 5e-33
seq43684 105 1e-20
seq137420 102 2e-19
seq106173 100 6e-19
seq95988 100 6e-19
seq4652 96.9 7e-18
seq140962 91.5 3e-16
seq172709 87.8 4e-15
seq123671 75.2 2e-11
seq181104 73.4 8e-11
>seq153649
Length=14578
Score = 273 bits (302), Expect = 5e-71
Identities = 279/364 (77%), Gaps = 20/364 (5%)
Strand=Plus/Plus
Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60
||| | |||||||||| | || | ||||||||||| ||| || ||||||| | |
Sbjct 14174 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 14233
Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120
||||||| || ||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 14234 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 14293
Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180
| |||| |||||| |||||||||||| ||||||| |||| ||| | ||||
Sbjct 14294 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATAAC 14345
Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238
| || |||| |||||||||||||||||||| ||||| ||||||||||| || | |
Sbjct 14346 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 14405
Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298
||||||||| ||||||||||| |||||||||||| ||| | | ||| || | |
Sbjct 14406 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 14465
Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348
| ||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 14466 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 14525
Query 349 CTTA 352
||||
Sbjct 14526 CTTA 14529
>seq38152
Length=2419
Score = 178 bits (196), Expect = 3e-42
Identities = 235/323 (73%), Gaps = 5/323 (2%)
Strand=Plus/Minus
Query 10 TCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACG 69
||||||| | || | |||||||| | || | ||||||||||||| | || ||||||
Sbjct 1779 TCTTCACAGACATGTCTATTTCACCAAAACTTTCTTTGAGACAGTGCCTAGATTGTTACG 1720
Query 70 CCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAG 129
||||| |||||||| ||||||||| |||||||||||| || ||||||||| ||||||||
Sbjct 1719 CCTTTTGTGCGGGTTGGAACTTACTTGACAAGGAATTTTGCAACCTTAGGATCGTTATAG 1660
Query 130 TTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAGATC 185
||| | |||| || || |||||| || | || | | | || | || |
Sbjct 1659 TTATGATCGCCATTCACCAGGGCTTCGGTAGCCATCTCCCCTGTCATCAAGTCACCAACT 1600
Query 186 CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCA 245
|||| ||||| | ||| || |||||||| || |||||| ||||| | |||| |
Sbjct 1599 TCCTTGACCTTTCGACACTAGGTAGGCGTCAAGCCCCATACATGGTCTTACAACTTTGTG 1540
Query 246 GAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG-GCCTGTCATAGAC 304
|| || | ||||||||||||||| | || | ||||| || ||||| || | || |
Sbjct 1539 GATACTTTTGTTTTTGGTAAACAATTGCCTAGGCCTGGTCACTGCGACCCCTTTATGGGG 1480
Query 305 AGGCACCCCTTCTCCCTAAGTTA 327
|||||||||||||| | ||||||
Sbjct 1479 AGGCACCCCTTCTCTCGAAGTTA 1457
>seq105318
Length=3320
Score = 174 bits (192), Expect = 3e-41
Identities = 212/286 (74%), Gaps = 5/286 (2%)
Strand=Plus/Minus
Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 106
||||| || || | || ||||||||||| |||||||| |||||||||| |||||||||||
Sbjct 2791 GAGACGGTACCTAGATTGTTACGCCTTTTGTGCGGGTTGGAACTTACCTGACAAGGAATT 2732
Query 107 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCT 166
| |||||||||||| ||||||||||| | ||| |||| | |||||||| || | |||
Sbjct 2731 TTGCTACCTTAGGATCGTTATAGTTATGACCGTCGTTCAGTGGGGCTTTGGTAGCCAGCT 2672
Query 167 TCGAT-TGCTC---TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCT 222
| | | || | || | |||| ||||| ||||| || ||| |||| | ||
Sbjct 2671 CCCTTGTCATCAAGTCACCAACTTCCTTGACCTTTCAGCATTAGGTAGGTGTCAACCCCC 2612
Query 223 ATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTA 282
|||||| ||||| | |||| | || || | ||||||||||||||||| || ||||
Sbjct 2611 ATACATGGTCTTACAACTTTGACGATACTTATGTTTTTGGTAAACAGTTGCCCAAGCCTG 2552
Query 283 TTCTCTGCG-GCCTGTCATAGACAGGCACCCCTTCTCCCTAAGTTA 327
|| || || || | || | ||| |||||||||||| ||||||
Sbjct 2551 GTCACTACGTCCCCTTTATGGGGAGGTACCCCTTCTCCCAAAGTTA 2506
>seq18435
Length=19846
Score = 159 bits (176), Expect = 7e-37
Identities = 257/363 (71%), Gaps = 21/363 (6%)
Strand=Plus/Minus
Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60
|| || |||||||||| || | |||||||| || || | ||| | |||| ||
Sbjct 15723 TAGCCTGCATCTTCACAAACATATCTATTTCACCAAGCCTCTCCA--AGATATTGCCTAA 15666
Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120
|||||||| ||||| ||| |||| | ||||| | |||||||||||| ||||||||| |
Sbjct 15665 ATCGTTACATCTTTCATGCAGGTCAAAGCTTACTCAACAAGGAATTTCACTACCTTAGAA 15606
Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT--------AAGTTCACTG-CTTCGAT 171
|||||||| |||||||| || ||||| | |||| || | | ||| | || |
Sbjct 15605 CCGTTATAATTACGGCCACCATTTACCAGAGCTTCGATCGTCAATTCCCCTGTCATCAAG 15546
Query 172 TGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCG--TCAGCTCCTATACATC 229
| | | ||| |||| ||||| | || ||||| ||| ||||| || ||| ||
Sbjct 15545 T-CACCAAC----TTCCTTGACCTTTCGACAATGGGCAAGCGTATCAGC-CCCATATATG 15492
Query 230 GTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTA--TTCTC 287
||| ||||| ||||| |||| |||||||||||||||| |||| || ||| | ||
Sbjct 15491 ACCTTATGACTTTGCAGAGACCTATGTTTTTGGTAAACAGCCGCTCAGGACTAGTTCCTA 15432
Query 288 TGCGGCCTGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTT 347
|| || | || ||||| |||||||||| |||||| |||| |||||| | ||||
Sbjct 15431 TGACCCCCTTTATGAGGAGGCATCCCTTCTCCCAAAGTTATGGGGCTATTTTGTCAAGTT 15372
Query 348 CCT 350
|||
Sbjct 15371 CCT 15369
>seq50606
Length=2049
Score = 156 bits (172), Expect = 9e-36
Identities = 208/286 (73%), Gaps = 5/286 (2%)
Strand=Plus/Plus
Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 106
|||| ||||| | || |||||||||||| ||||||| |||||||||| |||||||||||
Sbjct 530 GAGAGGGTGCCTAGATTGTTACGCCTTTCATGCGGGTTGGAACTTACCTGACAAGGAATT 589
Query 107 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCT 166
| |||||||||||| ||||||||||| | ||| |||| ||| |||||| || | ||
Sbjct 590 TTGCTACCTTAGGATCGTTATAGTTATGACCGTCGTTCACTAGGGCTTTGGTAGCCAACT 649
Query 167 TCGAT-TGCTC---TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCT 222
| | | || | || | |||| ||||| ||||| || ||| |||| | ||
Sbjct 650 CCCTTGTCATCAAGTCACCAACTTCCTTGACCTTTCAGCATTAGGTAGGTGTCAACCCCC 709
Query 223 ATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTA 282
|||||| ||||| | |||| | || || | ||||||| || |||||| || ||||
Sbjct 710 ATACATGGTCTTACAACTTTGTTGATACTTATGTTTTTAGTGAACAGTTGCCCAAGCCTG 769
Query 283 TTCTCTGCG-GCCTGTCATAGACAGGCACCCCTTCTCCCTAAGTTA 327
|| || || || | || | ||| ||| |||||||| ||||||
Sbjct 770 GTCACTACGTCCCCTTTATGGGGAGGTACCACTTCTCCCAAAGTTA 815
>seq74092
Length=2799
Score = 147 bits (162), Expect = 5e-33
Identities = 153/200 (77%), Gaps = 12/200 (6%)
Strand=Plus/Minus
Query 177 TAACAGATCCCCTTA--ACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTT 234
||||| || |||| |||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 2790 TAACACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTT 2731
Query 235 GCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC 294
| |||||||||| ||||||||||| |||||||||||| ||| | | ||| ||
Sbjct 2730 ACCACTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCT 2671
Query 295 TGTC------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGA 344
| | | ||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 2670 TTCCTAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGA 2611
Query 345 GTTCCTTAACAATAGTTCTC 364
||||||| || ||||||
Sbjct 2610 GTTCCTTCGACATGGTTCTC 2591
>seq43684
Length=4082
Score = 105 bits (116), Expect = 1e-20
Identities = 106/136 (78%), Gaps = 4/136 (3%)
Strand=Plus/Plus
Query 220 CCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGC 279
|| |||||| ||||| | | || || || | |||||||||||||||||||||||||||||
Sbjct 3349 CCCATACATGGTCTTACAATTTTGCGGAGAACTGTGTTTTTGGTAAACAGTCGCTTGGGC 3408
Query 280 CTATTCTCTGCGGCCTGTCATAG---ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCAT 336
| || ||| | || | | | | |||||||||||||| | ||||||| ||| ||
Sbjct 3409 AT-GTCACTGGGACCCCCCTTTGTGAAGAGGCACCCCTTCTCTCGAAGTTACAGGGCTAT 3467
Query 337 TTTGCCGAGTTCCTTA 352
|||||||| |||||||
Sbjct 3468 TTTGCCGACTTCCTTA 3483
>seq137420
Length=3656
Score = 102 bits (112), Expect = 2e-19
Identities = 152/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120
||| ||||||||||||||||||| ||||||||| ||||| |||||| ||||||||||||
Sbjct 2053 ATCATTACGCCTTTCGTGCGGGTTGGAACTTACTTGACAACGAATTTTGCTACCTTAGGA 2112
Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC--- 176
||| ||||||| ||| || | ||||| | | | |||| | | ||
Sbjct 2113 TTGTTGTAGTTACAAATGCCATTCATCAAGGCTTTAATCACCAACTTCTCTATCATCAGG 2172
Query 177 TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGC 236
| || | | |||||||| | | || | ||| | | | | |||||| || |||| |
Sbjct 2173 TCACCAACCTCCTTAACCATTCGCCAATGAGCAAACATTAACCCCTATATATGATCTTAC 2232
Query 237 GACTTAGCAGAAACCTGTGTTTTTGGTAAACAGT 270
|||| ||||| || ||| ||||||||||| |||
Sbjct 2233 AACTTTGCAGAGACATGTATTTTTGGTAAATAGT 2266
>seq106173
Length=7727
Score = 100 bits (110), Expect = 6e-19
Identities = 105/136 (77%), Gaps = 4/136 (3%)
Strand=Plus/Plus
Query 220 CCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGC 279
|| |||||| ||||| | | || || | | |||||||||||||||||||||||||||||
Sbjct 2432 CCCATACATGGTCTTACAATTTTGCGAAGAACTGTGTTTTTGGTAAACAGTCGCTTGGGC 2491
Query 280 CTATTCTCTGCGGCCTGTCATAG---ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCAT 336
| || ||| | || | | | | |||||||||||||| | ||||||| ||| ||
Sbjct 2492 AT-GTCACTGGGACCCCCCTTTGTGAAGAGGCACCCCTTCTCTCGAAGTTACAGGGCTAT 2550
Query 337 TTTGCCGAGTTCCTTA 352
|||||||| |||||||
Sbjct 2551 TTTGCCGACTTCCTTA 2566
>seq95988
Length=5042
Score = 100 bits (110), Expect = 6e-19
Identities = 90/113 (80%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 42 TTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAG 101
|| |||| | |||| |||||| |||| ||||||| ||||||||||||||||||||| ||
Sbjct 4784 TTTTTGATATAGTGTCCAAATTGTTATGCCTTTCATGCGGGTCGGAACTTACCCGATAAT 4843
Query 102 GAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 154
||||| | ||| |||| ||| ||||||||| | ||||||| | ||| ||
Sbjct 4844 AAATTTTGTTACATTAGAACCATTATAGTTATAATCACCGTTTATTAGGGTTT 4896
>seq4652
Length=12224
Score = 96.9 bits (106), Expect = 7e-18
Identities = 153/215 (71%), Gaps = 7/215 (3%)
Strand=Plus/Minus
Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118
||||||||||| ||||| ||| |||| | ||||| | |||||||||||| | |||||||
Sbjct 5050 AAATCGTTACGTCTTTCATGCAGGTCAAAGCTTACTCAACAAGGAATTTCACGACCTTAG 4991
Query 119 GACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT--AAGTTCACTGCTTCGAT--TGC 174
||||||||| |||| ||| || ||||| |||| | ||| | | || | |
Sbjct 4990 AACCGTTATAATTACAGCCACCATTTACCAACGCTTCGATCGTCAATTCCTCTGTCATCA 4931
Query 175 TCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCG--TCAGCTCCTATACATCGTC 232
| || | |||| ||||| || ||||| ||| ||| | || ||| || | |
Sbjct 4930 AGTCACCAACTTCCTTGACCTTTTGACAATGGGCAAGCGTATCAAC-CCCATATATGGCC 4872
Query 233 TTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAAC 267
|| ||||| ||||| |||| ||||||||||||||
Sbjct 4871 TTATGACTTTGCAGAGACCTATGTTTTTGGTAAAC 4837
>seq140962
Length=2811
Score = 91.5 bits (100), Expect = 3e-16
Identities = 149/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCC--GACAAGGAATTTCGCTACCTTAG 118
||| |||||||||| |||||||| ||||||||| ||||| |||||| |||||||||
Sbjct 2078 ATCATTACGCCTTTTGTGCGGGTTGGAACTTACTTTTGACAACGAATTTTACTACCTTAG 2137
Query 119 GACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC- 176
|| ||| ||||||| | ||| || | ||||| | | | |||| | | ||
Sbjct 2138 GATTGTTGTAGTTACAACTGCCATTCATCAAGGCTTCAATCACCAACTTCTCTATCATCA 2197
Query 177 --TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTT 234
| || | | |||||||||| | | | ||| | | ||| |||||| || ||||
Sbjct 2198 GGTCACCAACCTCCTTAACCTTTCGCTAATGAGCAAACATTAGCCCCTATATATGATCTT 2257
Query 235 GCGACTTAGCAGAAACCTGTGTTTTTGGTAAA 266
| |||| ||||| || ||| |||||||||||
Sbjct 2258 TCAACTTTGCAGAGACATGTATTTTTGGTAAA 2289
>seq172709
Length=2738
Score = 87.8 bits (96), Expect = 4e-15
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 46 TGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAAT 105
||||| ||| ||| ||| ||| || |||| || |||| |||||||| ||||||||||
Sbjct 2179 TGAGATGGTGGCCAGATCATTATGCTTTTCATGTGGGTTAGAACTTACATGACAAGGAAT 2120
Query 106 TTCGCTACCTTAGGACCGTTATA 128
|| ||||||||||||||||||||
Sbjct 2119 TTTGCTACCTTAGGACCGTTATA 2097
>seq123671
Length=1211
Score = 75.2 bits (82), Expect = 2e-11
Identities = 57/65 (88%), Gaps = 2/65 (3%)
Strand=Plus/Minus
Query 62 TCGTTACGCCTTTCGTGCGGGTCGGA-ACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120
|| |||| | |||| || ||||||| ||||||||||||||||||||| |||||||||||
Sbjct 127 TCATTACACTTTTCATG-GGGTCGGGTACTTACCCGACAAGGAATTTCACTACCTTAGGA 69
Query 121 CCGTT 125
|||||
Sbjct 68 CCGTT 64
>seq181104
Length=17826
Score = 73.4 bits (80), Expect = 8e-11
Identities = 64/80 (80%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 53 GTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTA 112
||| ||| ||| ||| | ||| || ||||| ||||||| ||||| |||||| ||||
Sbjct 2809 GTGGCCAGATCATTATGTTTTTTATGTGGGTCAAAACTTACATGACAAAGAATTTTGCTA 2750
Query 113 CCTTAGGACCGTTATAGTTA 132
|||||||||||||||| |||
Sbjct 2749 CCTTAGGACCGTTATAATTA 2730
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1060164242944
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