Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq122661 212 2e-52 seq82610 212 2e-52 seq170456 208 2e-51 seq141854 154 4e-35 seq39935 114 4e-23 seq199355 111 5e-22 seq10531 109 2e-21 seq4020 107 6e-21 seq198256 102 2e-19 seq163130 96.9 1e-17 seq173905 84.2 7e-14 seq10424 77.0 1e-11 seq186839 75.2 3e-11 >seq122661 Length=936 Score = 212 bits (234), Expect = 2e-52 Identities = 219/286 (77%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 87 AACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGG 146 |||||||| | ||||||| | ||| ||||| || | ||||| | || ||||| Sbjct 733 AACCTTACTTAGGATTGACATGTTGTGAATCCTCTTGAAAGAGAGGAGTGCCTTTCGGAA 674 Query 147 GACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAG 206 ||| | ||||| ||||||||||||||||||| ||||||| || |||||||||||| Sbjct 673 TGTAGAC--ATAGGTGGTGCATGGTTGTCGTCAGCTTGTGTCGTAAGGTGTTGGGTTAAG 616 Query 207 TCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTT 266 |||| ||| |||| |||||||| || |||||||||| | || | || || || || || Sbjct 615 TCCCACAATGAGCACAACCCTTGAGTTTAGTTGCCACCCTTGAATTTGGAACCCTGAGCA 556 Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 || | | || || || |||||||||| ||| ||| |||| |||||||| |||||||| Sbjct 555 GATTTTTGAGGATAAGCCAGAGGAAGGTGAGGATGACTTCAAGTCATCATGTCCCTTATG 496 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGA 372 ||||||||||||| |||||||||| ||| ||||| ||| |||| Sbjct 495 CCTTGGGCTACACACATGCTACAATGACCAAGACAAAAGGCCGCGA 450 >seq82610 Length=1271 Score = 212 bits (234), Expect = 2e-52 Identities = 219/286 (77%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 87 AACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGG 146 |||||||| | ||||||| | ||| ||||| || | ||||| | || || || Sbjct 383 AACCTTACTTAGGATTGACATGTTGTGAATCCTCTTGAAAGAGAGGAGTGCCTTTTGGAA 324 Query 147 GACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAG 206 ||| | ||||| ||||||||||||||||||| ||||||| || |||||||||||| Sbjct 323 TGTAGAC--ATAGGTGGTGCATGGTTGTCGTCAGCTTGTGTCGTAAGGTGTTGGGTTAAG 266 Query 207 TCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTT 266 |||||||| |||| |||||||| || |||||||||| | || | || || || || || Sbjct 265 TCCCGCAATGAGCACAACCCTTGAGTTTAGTTGCCACCCTTGAATTTGGAACCCTGAGCA 206 Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 || | | || || || |||||||||| ||| ||| |||| |||||||| |||||||| Sbjct 205 GATTTTTGAGGATAAGCCAGAGGAAGGTGAGGATGACTTCAAGTCATCATGTCCCTTATG 146 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGA 372 ||||||||||||| |||||||||| ||| ||||| ||| |||| Sbjct 145 CCTTGGGCTACACACATGCTACAATGACCAAGACAAAAGGCCGCGA 100 >seq170456 Length=1356 Score = 208 bits (230), Expect = 2e-51 Identities = 243/322 (75%), Gaps = 7/322 (2%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 ||||| |||||||||||||| |||||| | | ||||||||||||||||||| |||| Sbjct 478 CGCAAAAATGAAACTCAAAGGA-TTGACGAGATTCTGCACAAGCGGTGGAGCATGGGGTT 420 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||| | |||| | ||||||||||||||| ||||||| ||| ||||| || | Sbjct 419 TAATTCAATGCAAAGTGAAGAACCTTACCAAGGATTGACATGTCGTGAATCCTCTTGAAA 360 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAG--GTGATGCATGGTTGTCGTCAGCTCG 184 ||| | | || |||| | | | | |||| ||| ||||||| | ||| || | Sbjct 359 AAGAAGGGTGCC-TTCGAG--AATGCG-GACAAAAGTGGTGCATGGCTATCGCCAATTTA 304 Query 185 TGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATC 244 |||||| || ||| |||||||||||||| |||| ||||||| | | |||||||||| | Sbjct 303 TGTCGTAAGGTGTCAAGTTAAGTCCCGCAATGAGCTCAACCCTCATGTTTAGTTGCCACC 244 Query 245 ATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACG 304 || |||| | ||| | || ||||| ||||| ||| |||||||||||| ||| | | Sbjct 243 GTTGAGTTTGACACCTTTAGCGAACTGCTGGTGATAAATCGGAGGAAGGTGAGGATCATG 184 Query 305 TCAAATCATCATGCCCCTTATG 326 |||| |||||||||| |||||| Sbjct 183 TCAAGTCATCATGCCTCTTATG 162 >seq141854 Length=7082 Score = 154 bits (170), Expect = 4e-35 Identities = 167/218 (77%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 280 AAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACAC 339 || || |||||||||| ||| || ||||| ||||||||||| ||||| | |||| |||| Sbjct 2445 AAGCCAGAGGAAGGTGAGGATGATGTCAAGTCATCATGCCCTTTATGCCTCGGGCGACAC 2386 Query 340 ACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAA 399 | |||||||||||| | | |||||| | | || || ||||| || || ||| || Sbjct 2385 ATGTGCTACAATGGCCGAGACAAAGAGTCGTGATCCCACGAGGGTGAGTTAAATCCAAAA 2326 Query 400 AGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGT 459 | || |||||||||||||| || || ||||||| || |||||||| |||||||||| | Sbjct 2325 ACCAGTCCTCAGTTCGGATTGCAGGCTACAACTCGCCTGTATGAAGCCGGAATCGCTAAT 2266 Query 460 AATCGTA-GATCAG-CATGCTACGGTGAATACGTTCCC 495 |||| || || || ||| | | ||||||| |||||| Sbjct 2265 AATCATATGA--AGCCATACGATGGTGAATTTGTTCCC 2230 >seq39935 Length=6080 Score = 114 bits (126), Expect = 4e-23 Identities = 175/247 (71%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 249 AGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAA 308 |||| || ||| | ||| |||| | |||| ||| | | || |||| ||| || ||||| Sbjct 1772 AGTTTGGAACT-TGAGTAGACTACTAGTGATAAATCAAATGAGGGTGAGGATGATGTCAA 1714 Query 309 ATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCA 368 | ||||||||||||||| ||||| ||||| || ||||||||| |||| ||| Sbjct 1713 GTTATCATGCCCCTTATGCCTTGGGTGACACAAGTACTACAATGGTTGGGACAATGGGAC 1654 Query 369 GCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGC 428 |||| | ||||| | | || ||| ||| |||| ||| ||| ||||||| || | Sbjct 1653 GCGATCTCACGAGGGTGAACTAACTCCAAAAACTTGTCATCAATTCAGATTGTAAGCTAC 1594 Query 429 AACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAAT 487 ||||| ||| |||||| |||| |||||||| | || || ||| | | || |||| Sbjct 1593 AACTCTCCTACATGAAGTCAAAATCACTAGTAATTGCCAATTAGCCATACAATGGCGAAT 1534 Query 488 ACGTTCC 494 |||||| Sbjct 1533 TCGTTCC 1527 >seq199355 Length=4346 Score = 111 bits (122), Expect = 5e-22 Identities = 189/271 (70%), Gaps = 5/271 (2%) Strand=Plus/Plus Query 192 AGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGT 251 || ||||| || || |||| ||| ||| | |||||| | | ||||||| || |||| ||| Sbjct 456 AGGTGTTGAGTAAAATCCCACAATGAGTGTAACCCTCA-GTTTAGTTGTCACCATTGAGT 514 Query 252 TGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATC 311 | || | | || |||| | || || | | ||||||||| ||| ||| |||| || Sbjct 515 TTGGAATCTTGGGTAGACTCTCATTGCTAAGCAGAAGGAAGGTGAGGATGACATCAAGTC 574 Query 312 ATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCG 371 |||||| ||||||| | || |||||| ||||||||||| ||| ||||||||| || Sbjct 575 ATCATGGTCCTTATGCCCCGAGCAACACACTTGCTACAATGGTCAAGACAAAGGGCTACG 634 Query 372 ---AAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGC 428 | || | || ||| || ||| ||| ||| || |||||| | |||| Sbjct 635 ATCACACAAAGGGGGTGAGCCAACTCCA-AAAACCCACCTCCATTTGGATTGCAAGCTGC 693 Query 429 AACTCGACTATATGAAGCTGGAATCGCTAGT 459 |||||| || |||||| | || || ||||| Sbjct 694 AACTCGCCTGCATGAAGTTAGAGTCACTAGT 724 >seq10531 Length=4488 Score = 109 bits (120), Expect = 2e-21 Identities = 188/271 (69%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 192 AGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGT 251 || ||||| || || || ||||| ||||| |||||| | | ||||||| || |||| ||| Sbjct 3977 AGGTGTTGAGTAAAATCACGCAATGAGCGTAACCCTCATGTTTAGTTGTCACCATTGAGT 3918 Query 252 TGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATC 311 | || | | | |||| | || || | | ||||||||| ||| ||| |||| || Sbjct 3917 TTGGAATCTTGGGCAGACTCTCATTGCTAAGCAGAAGGAAGGTGAGGATGACATCAAGTC 3858 Query 312 ATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCG 371 |||||| ||||||| || |||||| ||||||||||| ||| ||||||||| || Sbjct 3857 ATCATGGTCCTTATGCCCCAAGCAACACACTTGCTACAATGGTCAAGACAAAGGGCTACG 3798 Query 372 ---AAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGC 428 | || | || ||| || ||| ||| ||| || |||||| | |||| Sbjct 3797 ATCACACAAAGGGGGTGAGCCAACTCCA-AAAACCCACCTCCATTTGGATTGCAAGCTGC 3739 Query 429 AACTCGACTATATGAAGCTGGAATCGCTAGT 459 |||||| || |||||| | || || ||||| Sbjct 3738 AACTCGCCTGCATGAAGTTAGAGTCACTAGT 3708 >seq4020 Length=5217 Score = 107 bits (118), Expect = 6e-21 Identities = 130/173 (75%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 285 GGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTG 344 ||||||| ||| || || |||| ||||||||||||||||| |||| ||||||||| Sbjct 1406 GGAGGAAAGTGAAGATGATATCAAGTCATCATGCCCCTTATGCCCTGGGTGACACACGTG 1465 Query 345 CTACAATGGACAATACAAAGGGCAGCGAAACCGCGA-GGTCAAGCAAATCCCATAAAGTT 403 ||||||| | | ||||||| || | |||||| |||||| | || ||| ||| Sbjct 1466 TTACAATGATCGAAACAAAGGATCGC-ATTCCGCGAGGGTCAA-CTAACTCCAAAAACAC 1523 Query 404 GTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCT 456 || || |||| ||||| | ||||||||| ||||||||||||| |||| || Sbjct 1524 GTCCTTAGTTAGGATTACAAGCTGCAACTCACCTATATGAAGCTGAAATCACT 1576 >seq198256 Length=10162 Score = 102 bits (112), Expect = 2e-19 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 167 ATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCC 226 |||||| |||||||||| |||||| || |||||||||||||||| |||| |||||||||| Sbjct 5894 ATGGTTTTCGTCAGCTCATGTCGTAAGGTGTTGGGTTAAGTCCCACAACAAGCGCAACCC 5953 Query 227 TTAAGCTTAGTTGCCATCATTAAGTT 252 | | | |||||||||| | || |||| Sbjct 5954 TCATGTTTAGTTGCCACCGTTGAGTT 5979 >seq163130 Length=3520 Score = 96.9 bits (106), Expect = 1e-17 Identities = 94/120 (78%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 369 GCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGC 428 |||| |||| ||| ||| || ||| ||| || ||||||||||||||||| |||| Sbjct 3401 GCGATCCCGCAAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTGTAGGCTGC 3460 Query 429 AACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAAT 487 |||||| || ||||||| ||||||||||||||||| | |||| ||| | |||||||| Sbjct 3461 AACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAAT 3520 >seq173905 Length=13154 Score = 84.2 bits (92), Expect = 7e-14 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTT 67 ||||| ||||||||||||||||| || || | ||||||||| ||||| ||||| ||| Sbjct 12687 GCAAGAATGAAACTCAAAGGAATTAACAGGAGTCTGCACAAGCGATGGAGGATGTGATTT 12746 Query 68 AATTCGAAGCAACGCGAAGAA 88 |||| || |||| |||||||| Sbjct 12747 AATTTGATGCAAAGCGAAGAA 12767 >seq10424 Length=2673 Score = 77.0 bits (84), Expect = 1e-11 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 213 AACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGC 272 ||| || | ||| |||| |||||||||| | |||||| || || ||||||| |||| Sbjct 2239 AACAAGTGTAACACTTATGCTTAGTTGCTACCATTAACTTCAACA-TCTAAGTAGACTAT 2181 Query 273 CGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAA-TCATCATGCCCCTTAT 325 |||||| || | || |||||| ||| | | ||||| ||||||||||| |||| Sbjct 2180 CGGTGATAAGCTAAAGAAAGGTGAGGATGCCATCAAAATCATCATGCCCTTTAT 2127 >seq186839 Length=3665 Score = 75.2 bits (82), Expect = 3e-11 Identities = 68/86 (79%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 268 ACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGA 327 |||||| |||| ||| || || || ||| ||| ||| ||||||||||||| ||| ||| Sbjct 2013 ACTGCCAGTGATAAATCGAAGAAATGTGAGGATGACAGCAAATCATCATGCTCCTAATGC 1954 Query 328 TTTGGGCTACACACGTGCTACAATGG 353 | || |||||||||||||||||| Sbjct 1953 CCTAAGCGACACACGTGCTACAATGG 1928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1500834922240