Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq174704 140 5e-31 seq125052 136 6e-30 seq162762 82.4 1e-13 seq154158 78.8 1e-12 seq128807 78.8 1e-12 seq35604 78.8 1e-12 seq18495 78.8 1e-12 seq46366 77.0 5e-12 >seq174704 Length=1584 Score = 140 bits (154), Expect = 5e-31 Identities = 100/115 (87%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| |||||||||||| |||| ||||||||||| |||||| || ||||| Sbjct 1469 CTAGTTAGCAGGCTAAGGTCTCGTTTGTTAATGGAATTAACCAAACAAATTGCTTCACCA 1528 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 ||||| | ||||||||||| |||||||||||||||||||||||| | ||||| || Sbjct 1529 ACTAAAAGCGGCCATGCACTACCACCCATAGAATCAAGAAAGAGTTTTCAATTTG 1583 >seq125052 Length=1903 Score = 136 bits (150), Expect = 6e-30 Identities = 96/110 (87%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| |||||||||||| |||| ||||||||||| |||||| || ||||| Sbjct 1849 CTAGTTAGCAGGCTAAGGTCTCGTTTGTTAATGGAATTAACCAAACAAATTGCTTCACCA 1790 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 ||||| | ||||||||||| |||||||||||||||||||||||| | ||| Sbjct 1789 ACTAAAAGCGGCCATGCACTACCACCCATAGAATCAAGAAAGAGTTTTCA 1740 >seq162762 Length=1399 Score = 82.4 bits (90), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 9/106 (8%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGC----ATCACAGACCTGTTATTG 71 ||| |||||| || |||||| ||||||||| ||| || |||||| ||||| ||||| Sbjct 687 TCACTGTAGCACGTGTGCGGTCCAGAACATGTAAAGGTTTGTATCACAAACCTGATATTG 746 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCA--ATAGTCCCTCTAAGAAG 115 |||||||||| |||| || || ||| ||| ||||||||||||| Sbjct 747 CCTCAAACTTTCATT-CCT--AAACCACCATATTCCCTCTAAGAAG 789 >seq154158 Length=1230 Score = 78.8 bits (86), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 5/121 (4%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | | |||||| | | | || | || | ||||||||| ||||||||| | Sbjct 1100 ACTCGTTGAATACATTAGTGTAACACACATGTG-CCTAAAACATCTAAAGGCATCACATA 1042 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA--ATAGTCCCTCTAAGAAGCCAG 119 ||| |||| |||||||||||| | | || |||| | || ||||||||||||||| || Sbjct 1041 CCTATTATCACCTCAAACTTCCTTGGCCT--AAGCGATCATGGTCCCTCTAAGAAGCTAG 984 Query 120 C 120 | Sbjct 983 C 983 >seq128807 Length=4782 Score = 78.8 bits (86), Expect = 1e-12 Identities = 93/121 (77%), Gaps = 5/121 (4%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | | |||||| | | | || | || | ||||||||| ||||||||| | Sbjct 3649 ACTCGTTGAATACATTAGTGTAACACACATGTG-CCTAAAACATCTAAAGGCATCACAAA 3707 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA--ATAGTCCCTCTAAGAAGCCAG 119 ||| |||| |||||||||||| ||||| |||| | || ||||||||||||||| || Sbjct 3708 CCTATTATCACCTCAAACTTCC-TTGGC-CTAAGCGATCATGGTCCCTCTAAGAAGCTAG 3765 Query 120 C 120 | Sbjct 3766 C 3766 >seq35604 Length=6738 Score = 78.8 bits (86), Expect = 1e-12 Identities = 82/106 (77%), Gaps = 4/106 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||| | | | ||| ||| |||||||||| |||| | |||||| |||||||||| Sbjct 3045 TCAATGTAACACACATGCAATCCAAAACATCTAAGAGCATTATAGACCTATTATTGCCTC 2986 Query 76 AAACTTCCATTGGCTGGAAGCCA--ATAGTCCCTCTAAGAAGCCAG 119 ||| |||| | | || || | | |||||||||||||||||| || Sbjct 2985 AAATTTCCTTCGCCT--AAACTATCATAGTCCCTCTAAGAAGCTAG 2942 >seq18495 Length=3373 Score = 78.8 bits (86), Expect = 1e-12 Identities = 81/103 (79%), Gaps = 5/103 (5%) Strand=Plus/Plus Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 79 |||| ||| | || | || | ||||||||||||||||| |||| | |||| |||||||| Sbjct 3210 TGTAACGCACATGTG-CCTAAAACATCTAAGGGCATCATAGACATATTATCACCTCAAAC 3268 Query 80 TTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAGC 120 |||| | | || |||| | || ||||||||||||||| ||| Sbjct 3269 TTCCCTGGCCT--AAGCGACCATGGTCCCTCTAAGAAGCTAGC 3309 >seq46366 Length=1809 Score = 77.0 bits (84), Expect = 5e-12 Identities = 79/101 (78%), Gaps = 8/101 (8%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||||| | |||||| ||| ||||| ||| |||||||| || ||||||||| Sbjct 1101 TCAATGTAGCATGTGTGCGGTCCAAAACATGTAAAGGCATCACTGA-----TATTGCCTC 1155 Query 76 AAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAG 115 |||||| |||| || ||| | | |||||||| |||||||| Sbjct 1156 AAACTTTCATT--CTTGAACCACCATAGTCCCCCTAAGAAG 1194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795175582764