Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1
_202015-09-10] 210,444 sequences; 539,624,286 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq174704 140 5e-31
seq125052 136 6e-30
seq162762 82.4 1e-13
seq154158 78.8 1e-12
seq128807 78.8 1e-12
seq35604 78.8 1e-12
seq18495 78.8 1e-12
seq46366 77.0 5e-12
>seq174704
Length=1584
Score = 140 bits (154), Expect = 5e-31
Identities = 100/115 (87%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||||| |||||||||||| |||| ||||||||||| |||||| || |||||
Sbjct 1469 CTAGTTAGCAGGCTAAGGTCTCGTTTGTTAATGGAATTAACCAAACAAATTGCTTCACCA 1528
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256
||||| | ||||||||||| |||||||||||||||||||||||| | ||||| ||
Sbjct 1529 ACTAAAAGCGGCCATGCACTACCACCCATAGAATCAAGAAAGAGTTTTCAATTTG 1583
>seq125052
Length=1903
Score = 136 bits (150), Expect = 6e-30
Identities = 96/110 (87%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||||| |||||||||||| |||| ||||||||||| |||||| || |||||
Sbjct 1849 CTAGTTAGCAGGCTAAGGTCTCGTTTGTTAATGGAATTAACCAAACAAATTGCTTCACCA 1790
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251
||||| | ||||||||||| |||||||||||||||||||||||| | |||
Sbjct 1789 ACTAAAAGCGGCCATGCACTACCACCCATAGAATCAAGAAAGAGTTTTCA 1740
>seq162762
Length=1399
Score = 82.4 bits (90), Expect = 1e-13
Identities = 84/106 (79%), Gaps = 9/106 (8%)
Strand=Plus/Plus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGC----ATCACAGACCTGTTATTG 71
||| |||||| || |||||| ||||||||| ||| || |||||| ||||| |||||
Sbjct 687 TCACTGTAGCACGTGTGCGGTCCAGAACATGTAAAGGTTTGTATCACAAACCTGATATTG 746
Query 72 CCTCAAACTTCCATTGGCTGGAAGCCA--ATAGTCCCTCTAAGAAG 115
|||||||||| |||| || || ||| ||| |||||||||||||
Sbjct 747 CCTCAAACTTTCATT-CCT--AAACCACCATATTCCCTCTAAGAAG 789
>seq154158
Length=1230
Score = 78.8 bits (86), Expect = 1e-12
Identities = 92/121 (76%), Gaps = 5/121 (4%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | | |||||| | | | || | || | ||||||||| ||||||||| |
Sbjct 1100 ACTCGTTGAATACATTAGTGTAACACACATGTG-CCTAAAACATCTAAAGGCATCACATA 1042
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA--ATAGTCCCTCTAAGAAGCCAG 119
||| |||| |||||||||||| | | || |||| | || ||||||||||||||| ||
Sbjct 1041 CCTATTATCACCTCAAACTTCCTTGGCCT--AAGCGATCATGGTCCCTCTAAGAAGCTAG 984
Query 120 C 120
|
Sbjct 983 C 983
>seq128807
Length=4782
Score = 78.8 bits (86), Expect = 1e-12
Identities = 93/121 (77%), Gaps = 5/121 (4%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | | |||||| | | | || | || | ||||||||| ||||||||| |
Sbjct 3649 ACTCGTTGAATACATTAGTGTAACACACATGTG-CCTAAAACATCTAAAGGCATCACAAA 3707
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA--ATAGTCCCTCTAAGAAGCCAG 119
||| |||| |||||||||||| ||||| |||| | || ||||||||||||||| ||
Sbjct 3708 CCTATTATCACCTCAAACTTCC-TTGGC-CTAAGCGATCATGGTCCCTCTAAGAAGCTAG 3765
Query 120 C 120
|
Sbjct 3766 C 3766
>seq35604
Length=6738
Score = 78.8 bits (86), Expect = 1e-12
Identities = 82/106 (77%), Gaps = 4/106 (4%)
Strand=Plus/Minus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||| |||| | | | ||| ||| |||||||||| |||| | |||||| ||||||||||
Sbjct 3045 TCAATGTAACACACATGCAATCCAAAACATCTAAGAGCATTATAGACCTATTATTGCCTC 2986
Query 76 AAACTTCCATTGGCTGGAAGCCA--ATAGTCCCTCTAAGAAGCCAG 119
||| |||| | | || || | | |||||||||||||||||| ||
Sbjct 2985 AAATTTCCTTCGCCT--AAACTATCATAGTCCCTCTAAGAAGCTAG 2942
>seq18495
Length=3373
Score = 78.8 bits (86), Expect = 1e-12
Identities = 81/103 (79%), Gaps = 5/103 (5%)
Strand=Plus/Plus
Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 79
|||| ||| | || | || | ||||||||||||||||| |||| | |||| ||||||||
Sbjct 3210 TGTAACGCACATGTG-CCTAAAACATCTAAGGGCATCATAGACATATTATCACCTCAAAC 3268
Query 80 TTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAGC 120
|||| | | || |||| | || ||||||||||||||| |||
Sbjct 3269 TTCCCTGGCCT--AAGCGACCATGGTCCCTCTAAGAAGCTAGC 3309
>seq46366
Length=1809
Score = 77.0 bits (84), Expect = 5e-12
Identities = 79/101 (78%), Gaps = 8/101 (8%)
Strand=Plus/Plus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||| |||||| | |||||| ||| ||||| ||| |||||||| || |||||||||
Sbjct 1101 TCAATGTAGCATGTGTGCGGTCCAAAACATGTAAAGGCATCACTGA-----TATTGCCTC 1155
Query 76 AAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAG 115
|||||| |||| || ||| | | |||||||| ||||||||
Sbjct 1156 AAACTTTCATT--CTTGAACCACCATAGTCCCCCTAAGAAG 1194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795175582764
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |