Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq206155 412 6e-113 seq21957 129 1e-27 seq67961 118 2e-24 seq193416 93.3 7e-17 seq160201 82.4 1e-13 seq27029 78.8 2e-12 seq25674 75.2 2e-11 >seq206155 Length=6340 Score = 412 bits (456), Expect = 6e-113 Identities = 268/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || ||||||||||||||||||||||||||||||| Sbjct 3232 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 3290 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 3291 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 3350 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3351 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 3410 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 3411 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 3470 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || |||||||||||||||||||| |||||| |||| |||||| Sbjct 3471 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 3523 >seq21957 Length=3864 Score = 129 bits (142), Expect = 1e-27 Identities = 142/191 (74%), Gaps = 10/191 (5%) Strand=Plus/Minus Query 46 AACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 105 ||||||||||||||| |||||| ||||| ||| |||| |||| || |||| Sbjct 1837 AACTAACCTGTCTCA----------AACCCAACTCACTTTCTCTATGGGTGGATGGACAA 1788 Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165 |||||| ||| | || | ||| |||||||||||||| || | ||||| |||| Sbjct 1787 TCCAACACTTGGTAATTTTTTATTCAAAATGATAGGAAGAGCTGATGTTGAAGGGTCAAC 1728 Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225 |||||| || || |||| ||||||| ||| | || |||||| |||||||||||||| Sbjct 1727 AAGCAATGTTTGTAGGAACACTTGGCTAAAACAGGACAATTATCCTTGTGGTAACTTTTC 1668 Query 226 TGGCACCTCTA 236 || |||||||| Sbjct 1667 TGACACCTCTA 1657 >seq67961 Length=1552 Score = 118 bits (130), Expect = 2e-24 Identities = 142/194 (73%), Gaps = 12/194 (6%) Strand=Plus/Plus Query 43 TAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAA 102 || ||||||||||||||| |||||| ||||| || |||| |||| || | Sbjct 1053 TAGAACTAACCTGTCTCA----------AACCCAACTCAC--TCTCTATGGGTGGATGGA 1100 Query 103 CAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATC 162 ||||||||| ||| | || | ||| |||||||||||||| || | ||||| || Sbjct 1101 CAATCCAACACTTGGTAATTTTTTATTCAAAATGATAGGAAGAGCTGATGTTGAAGGGTC 1160 Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222 || |||||| || || |||| ||||||| ||| | || |||||| ||||||||||| Sbjct 1161 AACAAGCAATGTTTGTAGGAACACTTGGCTAAAACAGGACAATTATCCTTGTGGTAACTT 1220 Query 223 TTCTGGCACCTCTA 236 ||||| |||| ||| Sbjct 1221 TTCTGACACCGCTA 1234 >seq193416 Length=2885 Score = 93.3 bits (102), Expect = 7e-17 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 ||||||||||||||||| |||||||| |||||||||| |||||||||||||||| ||||| Sbjct 61 TCGCTATGAACGCTTGGTTGCCACAAACCAGTTATCCTTGTGGTAACTTTTCTGACACCT 2 Query 234 C 234 | Sbjct 1 C 1 >seq160201 Length=1676 Score = 82.4 bits (90), Expect = 1e-13 Identities = 67/82 (82%), Gaps = 7/82 (9%) Strand=Plus/Minus Query 41 GGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCC-------TATTA 93 ||||||| |||||||||||| || |||| |||||| | |||||||||| ||||| Sbjct 1335 GGTAAAATTAACCTGTCTCACGATGGTCCAAACCCGGTTCACGTTCCCTATTCCCTATTA 1276 Query 94 GTGGGTGAACAATCCAACGCTT 115 ||||||||||||||||| ||| Sbjct 1275 ATGGGTGAACAATCCAACACTT 1254 >seq27029 Length=1655 Score = 78.8 bits (86), Expect = 2e-12 Identities = 67/82 (82%), Gaps = 7/82 (9%) Strand=Plus/Plus Query 41 GGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT----TAGTG 96 ||||||| |||||||||||| || ||||||||||| ||||||||||||| || || Sbjct 359 GGTAAAATTAACCTGTCTCACGATCGTCTAAACCCAATTCACGTTCCCTATTCCCTATTG 418 Query 97 ---GGTGAACAATCCAACGCTT 115 ||||||||||||||| ||| Sbjct 419 ATAGGTGAACAATCCAACACTT 440 >seq25674 Length=2236 Score = 75.2 bits (82), Expect = 2e-11 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 38 TAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGG 97 ||| |||||||||| || ||||| || | |||||||||| | ||||||| |||| |||| Sbjct 718 TAGAGTAAAACTAATCTATCTCACGATGTTCTAAACCCAACCCACGTTCTTTATTGGTGG 659 Query 98 GTGAACAAT 106 ||||||||| Sbjct 658 GTGAACAAT 650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 852601966464