Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1
_202015-09-10] 210,444 sequences; 539,624,286 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq206155 412 6e-113
seq21957 129 1e-27
seq67961 118 2e-24
seq193416 93.3 7e-17
seq160201 82.4 1e-13
seq27029 78.8 2e-12
seq25674 75.2 2e-11
>seq206155
Length=6340
Score = 412 bits (456), Expect = 6e-113
Identities = 268/293 (91%), Gaps = 1/293 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| |||| | | || |||||||||||||||||||||||||||||||
Sbjct 3232 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 3290
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 3291 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 3350
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3351 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 3410
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 3411 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 3470
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||||| ||| || |||||||||||||||||||| |||||| |||| ||||||
Sbjct 3471 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 3523
>seq21957
Length=3864
Score = 129 bits (142), Expect = 1e-27
Identities = 142/191 (74%), Gaps = 10/191 (5%)
Strand=Plus/Minus
Query 46 AACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 105
||||||||||||||| |||||| ||||| ||| |||| |||| || ||||
Sbjct 1837 AACTAACCTGTCTCA----------AACCCAACTCACTTTCTCTATGGGTGGATGGACAA 1788
Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165
|||||| ||| | || | ||| |||||||||||||| || | ||||| ||||
Sbjct 1787 TCCAACACTTGGTAATTTTTTATTCAAAATGATAGGAAGAGCTGATGTTGAAGGGTCAAC 1728
Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225
|||||| || || |||| ||||||| ||| | || |||||| ||||||||||||||
Sbjct 1727 AAGCAATGTTTGTAGGAACACTTGGCTAAAACAGGACAATTATCCTTGTGGTAACTTTTC 1668
Query 226 TGGCACCTCTA 236
|| ||||||||
Sbjct 1667 TGACACCTCTA 1657
>seq67961
Length=1552
Score = 118 bits (130), Expect = 2e-24
Identities = 142/194 (73%), Gaps = 12/194 (6%)
Strand=Plus/Plus
Query 43 TAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAA 102
|| ||||||||||||||| |||||| ||||| || |||| |||| || |
Sbjct 1053 TAGAACTAACCTGTCTCA----------AACCCAACTCAC--TCTCTATGGGTGGATGGA 1100
Query 103 CAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATC 162
||||||||| ||| | || | ||| |||||||||||||| || | ||||| ||
Sbjct 1101 CAATCCAACACTTGGTAATTTTTTATTCAAAATGATAGGAAGAGCTGATGTTGAAGGGTC 1160
Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222
|| |||||| || || |||| ||||||| ||| | || |||||| |||||||||||
Sbjct 1161 AACAAGCAATGTTTGTAGGAACACTTGGCTAAAACAGGACAATTATCCTTGTGGTAACTT 1220
Query 223 TTCTGGCACCTCTA 236
||||| |||| |||
Sbjct 1221 TTCTGACACCGCTA 1234
>seq193416
Length=2885
Score = 93.3 bits (102), Expect = 7e-17
Identities = 57/61 (93%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233
||||||||||||||||| |||||||| |||||||||| |||||||||||||||| |||||
Sbjct 61 TCGCTATGAACGCTTGGTTGCCACAAACCAGTTATCCTTGTGGTAACTTTTCTGACACCT 2
Query 234 C 234
|
Sbjct 1 C 1
>seq160201
Length=1676
Score = 82.4 bits (90), Expect = 1e-13
Identities = 67/82 (82%), Gaps = 7/82 (9%)
Strand=Plus/Minus
Query 41 GGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCC-------TATTA 93
||||||| |||||||||||| || |||| |||||| | |||||||||| |||||
Sbjct 1335 GGTAAAATTAACCTGTCTCACGATGGTCCAAACCCGGTTCACGTTCCCTATTCCCTATTA 1276
Query 94 GTGGGTGAACAATCCAACGCTT 115
||||||||||||||||| |||
Sbjct 1275 ATGGGTGAACAATCCAACACTT 1254
>seq27029
Length=1655
Score = 78.8 bits (86), Expect = 2e-12
Identities = 67/82 (82%), Gaps = 7/82 (9%)
Strand=Plus/Plus
Query 41 GGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT----TAGTG 96
||||||| |||||||||||| || ||||||||||| ||||||||||||| || ||
Sbjct 359 GGTAAAATTAACCTGTCTCACGATCGTCTAAACCCAATTCACGTTCCCTATTCCCTATTG 418
Query 97 ---GGTGAACAATCCAACGCTT 115
||||||||||||||| |||
Sbjct 419 ATAGGTGAACAATCCAACACTT 440
>seq25674
Length=2236
Score = 75.2 bits (82), Expect = 2e-11
Identities = 58/69 (84%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 38 TAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGG 97
||| |||||||||| || ||||| || | |||||||||| | ||||||| |||| ||||
Sbjct 718 TAGAGTAAAACTAATCTATCTCACGATGTTCTAAACCCAACCCACGTTCTTTATTGGTGG 659
Query 98 GTGAACAAT 106
|||||||||
Sbjct 658 GTGAACAAT 650
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 852601966464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |