Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1
_202015-09-10] 210,444 sequences; 539,624,286 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq87897 123 5e-26
seq153649 107 4e-21
seq198167 104 5e-20
seq111318 80.6 5e-13
>seq87897
Length=8636
Score = 123 bits (136), Expect = 5e-26
Identities = 158/213 (74%), Gaps = 5/213 (2%)
Strand=Plus/Plus
Query 129 CAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAG 188
|||||| ||||||| |||||||||| || ||| ||||| ||||| | ||||||
Sbjct 1589 CAGTTTTTATGGGGCGTAGGCCTCCCAAAAGGTGACGAAGGCGTGCAAAGGTTTCCTCAG 1648
Query 189 CTTGGATGGAAACCATG-CGCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACA-CC 245
| || ||| | || | | | |||||||| ||| ||||| |||||||||| | | ||
Sbjct 1649 GTCAGACGGAGAT--TGACCCTCGAGTGCAAAAGCAGAAGGGAGTTTGACTGCAAAATCC 1706
Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305
| | | |||| |||||||||| || |||| ||||||| || ||| | ||||| ||
Sbjct 1707 CACTCATTGAGCAAGGACGAAAGTTGGCCTTATTGATCCGACGATGCAAAGTGGAAAGGT 1766
Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGAT 338
|||||||| ||||||||||| ||| || ||||
Sbjct 1767 CGTCGCTCAACGGATAAAAGTTACTCTAAGGAT 1799
>seq153649
Length=14578
Score = 107 bits (118), Expect = 4e-21
Identities = 163/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
||||||| || || ||| ||||| ||||||||| |||||| |||||||||||||||
Sbjct 14005 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 13946
Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228
| | ||| || |||| ||| ||| | || || | || || | |||
Sbjct 13945 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 13891
Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288
|| |||||| || ||| | ||| | ||| |||||||||||| | || ||||||||
Sbjct 13890 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 13831
Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|| | | ||||| ||| |||||| |||||| |||| ||| | |||||||
Sbjct 13830 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 13780
>seq198167
Length=4837
Score = 104 bits (114), Expect = 5e-20
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207
|||||||||| ||||| |||| | ||| | | ||||| | ||| ||| | |
Sbjct 4555 GCCTCCCAAAAGGTAACAGAGGTGTACAAGGGTTTCCTCAAGTCGGACGGAGATTGGCCC 4496
Query 208 CACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAA 267
| |||||||||||| ||||| | |||| | | | |||| | ||| || |||| |||||
Sbjct 4495 CTAAGTGCAAAGGCAGAAGGGAGCTTGATTACAAGACCCACTTGTCAAGTAGGGGCGAAA 4436
Query 268 GTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCT 327
||||| ||| |||| || ||||| || ||||| || | || ||| | |||||||| |
Sbjct 4435 GTCGGCTTTAGTGATTCGATGGTGCCGAGTGGAAGGGTCCTCACTCAATAGATAAAAGTT 4376
Query 328 ACCCTGGGGATA 339
|| || ||||||
Sbjct 4375 ACTCTAGGGATA 4364
>seq111318
Length=12297
Score = 80.6 bits (88), Expect = 5e-13
Identities = 91/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
|||||||| | | |||| | |||||||| | |||| | || | ||||||||||| ||
Sbjct 2958 AGTGCAAAAGTAGAAGGAAGCTTGACTGCAAGACCCGCCTATCGAACAGGGACGAAATTC 2899
Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330
|| |||| |||| || ||||| | ||||| || ||| ||| || |||||||| |||
Sbjct 2898 GGCCTTAGTGATTCGATGGTGCCAAGTGGAAGGGTTGTCACTCAACAGATAAAAGTTACT 2839
Query 331 CT 332
||
Sbjct 2838 CT 2837
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 980332598144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |