Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq87897 123 5e-26 seq153649 107 4e-21 seq198167 104 5e-20 seq111318 80.6 5e-13 >seq87897 Length=8636 Score = 123 bits (136), Expect = 5e-26 Identities = 158/213 (74%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 129 CAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAG 188 |||||| ||||||| |||||||||| || ||| ||||| ||||| | |||||| Sbjct 1589 CAGTTTTTATGGGGCGTAGGCCTCCCAAAAGGTGACGAAGGCGTGCAAAGGTTTCCTCAG 1648 Query 189 CTTGGATGGAAACCATG-CGCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACA-CC 245 | || ||| | || | | | |||||||| ||| ||||| |||||||||| | | || Sbjct 1649 GTCAGACGGAGAT--TGACCCTCGAGTGCAAAAGCAGAAGGGAGTTTGACTGCAAAATCC 1706 Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305 | | | |||| |||||||||| || |||| ||||||| || ||| | ||||| || Sbjct 1707 CACTCATTGAGCAAGGACGAAAGTTGGCCTTATTGATCCGACGATGCAAAGTGGAAAGGT 1766 Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGAT 338 |||||||| ||||||||||| ||| || |||| Sbjct 1767 CGTCGCTCAACGGATAAAAGTTACTCTAAGGAT 1799 >seq153649 Length=14578 Score = 107 bits (118), Expect = 4e-21 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 14005 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 13946 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| ||| ||| | || || | || || | ||| Sbjct 13945 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 13891 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 13890 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 13831 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 13830 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 13780 >seq198167 Length=4837 Score = 104 bits (114), Expect = 5e-20 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207 |||||||||| ||||| |||| | ||| | | ||||| | ||| ||| | | Sbjct 4555 GCCTCCCAAAAGGTAACAGAGGTGTACAAGGGTTTCCTCAAGTCGGACGGAGATTGGCCC 4496 Query 208 CACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAA 267 | |||||||||||| ||||| | |||| | | | |||| | ||| || |||| ||||| Sbjct 4495 CTAAGTGCAAAGGCAGAAGGGAGCTTGATTACAAGACCCACTTGTCAAGTAGGGGCGAAA 4436 Query 268 GTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCT 327 ||||| ||| |||| || ||||| || ||||| || | || ||| | |||||||| | Sbjct 4435 GTCGGCTTTAGTGATTCGATGGTGCCGAGTGGAAGGGTCCTCACTCAATAGATAAAAGTT 4376 Query 328 ACCCTGGGGATA 339 || || |||||| Sbjct 4375 ACTCTAGGGATA 4364 >seq111318 Length=12297 Score = 80.6 bits (88), Expect = 5e-13 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||| | | |||| | |||||||| | |||| | || | ||||||||||| || Sbjct 2958 AGTGCAAAAGTAGAAGGAAGCTTGACTGCAAGACCCGCCTATCGAACAGGGACGAAATTC 2899 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || |||| |||| || ||||| | ||||| || ||| ||| || |||||||| ||| Sbjct 2898 GGCCTTAGTGATTCGATGGTGCCAAGTGGAAGGGTTGTCACTCAACAGATAAAAGTTACT 2839 Query 331 CT 332 || Sbjct 2838 CT 2837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980332598144