Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq153649 107 2e-21 seq105318 75.2 1e-11 seq50606 75.2 1e-11 >seq153649 Length=14578 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 14149 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 14208 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 14209 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 14268 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 14269 GACAAGGAATTTCGCTACCTTAGGACAGTTA 14299 >seq105318 Length=3320 Score = 75.2 bits (82), Expect = 1e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || || |||| ||| |||||||||| |||||||||||| |||||||||||| |||| Sbjct 2772 TACGCCTTTTGTGCGGGTTGGAACTTACCTGACAAGGAATTTTGCTACCTTAGGATCGTT 2713 Query 173 A 173 | Sbjct 2712 A 2712 >seq50606 Length=2049 Score = 75.2 bits (82), Expect = 1e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||| ||| ||| |||||||||| |||||||||||| |||||||||||| |||| Sbjct 549 TACGCCTTTCATGCGGGTTGGAACTTACCTGACAAGGAATTTTGCTACCTTAGGATCGTT 608 Query 173 A 173 | Sbjct 609 A 609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546084436356