Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1
_202015-09-10] 210,444 sequences; 539,624,286 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq153649 107 2e-21
seq105318 75.2 1e-11
seq50606 75.2 1e-11
>seq153649
Length=14578
Score = 107 bits (118), Expect = 2e-21
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
||||||||| |||| || |||| || |||||||||| || | | ||||||||| |
Sbjct 14149 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 14208
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| || | ||||||| |||||||||||||||||||| ||||| |
Sbjct 14209 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 14268
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||| ||||
Sbjct 14269 GACAAGGAATTTCGCTACCTTAGGACAGTTA 14299
>seq105318
Length=3320
Score = 75.2 bits (82), Expect = 1e-11
Identities = 53/61 (87%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || || |||| ||| |||||||||| |||||||||||| |||||||||||| ||||
Sbjct 2772 TACGCCTTTTGTGCGGGTTGGAACTTACCTGACAAGGAATTTTGCTACCTTAGGATCGTT 2713
Query 173 A 173
|
Sbjct 2712 A 2712
>seq50606
Length=2049
Score = 75.2 bits (82), Expect = 1e-11
Identities = 53/61 (87%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || ||| ||| ||| |||||||||| |||||||||||| |||||||||||| ||||
Sbjct 549 TACGCCTTTCATGCGGGTTGGAACTTACCTGACAAGGAATTTTGCTACCTTAGGATCGTT 608
Query 173 A 173
|
Sbjct 609 A 609
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546084436356
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |