Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq120100 174 3e-41 seq170457 140 7e-31 seq171107 136 8e-30 seq139780 123 5e-26 seq104209 105 1e-20 seq86144 98.7 2e-18 seq134173 89.7 1e-15 seq134249 87.8 4e-15 seq209983 84.2 5e-14 seq165872 84.2 5e-14 seq140733 82.4 2e-13 seq170456 77.0 7e-12 >seq120100 Length=747 Score = 174 bits (192), Expect = 3e-41 Identities = 150/177 (85%), Gaps = 8/177 (5%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATC-AGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCT 87 ||||||||||| ||| || |||||||||||||||| || ||||||||||||||||| Sbjct 126 CACGCGGCATT-GCTCCGTCTAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCT 184 Query 88 CCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT-GTGACTGATC-ATCCTCTCAGACCA 145 ||||||||||||||| |||||||||||| ||||| ||| |||||| |||||||| ||||| Sbjct 185 CCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTCGTGGCTGATCTATCCTCTCGGACCA 244 Query 146 GTTAC--GGATCGTCGCCTTGGTGAGCCATTACCTC-ACCAACTAGCTAATCCGACC 199 | ||| | ||| || ||||||| ||| || |||| ||||||||||||||| |||| Sbjct 245 GCTACGTGCATCATCTCCTTGGT-AGCTATCGCCTCAACCAACTAGCTAATCAGACC 300 >seq170457 Length=565 Score = 140 bits (154), Expect = 7e-31 Identities = 118/145 (81%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 48 CAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGT 107 ||||||||||||| |||| || |||||||| ||||| ||||||||||||| | ||| || Sbjct 107 CAGGCTTTCGCCCGTTGTGAAAAATTCCCCATTGCTGTCTCCCGTAGGAGTTTAGACTGT 166 Query 108 GTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTG 167 |||||||| | |||||| ||||| | |||||||| ||| |||| ||| |||||| Sbjct 167 GTCTCAGTCCTAGTGTGGTCAATCATTTTATCAGACCAACTACTGATCATCGTCTTGGTA 226 Query 168 AGCCATTACCTCACCAACTAGCTAA 192 ||| ||| ||| ||||||||||||| Sbjct 227 AGCTATTGCCTTACCAACTAGCTAA 251 >seq171107 Length=3864 Score = 136 bits (150), Expect = 8e-30 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 46 ATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACC 105 ||||||||||| |||||||| || |||||||||| |||||| ||| |||| ||| || Sbjct 1516 ATCAGGCTTTCTCCCATTGTAGAAAATTCCCCACTATTGCCTCTTGTAAGAGTTTGGGCC 1457 Query 106 GTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGG 165 |||||||||| | |||||| || ||||| ||||| |||||| || ||| || |||||| Sbjct 1456 GTGTCTCAGTCCTAGTGTGGCTAATCATTCTCTCGGACCAGCTATTGATTATCACCTTGG 1397 Query 166 TGAGCCATTACCTCACCAACTAGCTAAT 193 | | | |||||||| ||||||| |||| Sbjct 1396 TAAACTATTACCTCGCCAACTAATTAAT 1369 >seq139780 Length=6461 Score = 123 bits (136), Expect = 5e-26 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 60 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 119 ||||| || ||||||| ||| |||||| ||| |||| ||| |||||||||||| | | Sbjct 5042 CATTGCAGAAAATTCCCCCCTGTTGCCTCTTGTAAGAGTTTGGGCCGTGTCTCAGTCCTA 5101 Query 120 GTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTC 179 ||||| || ||||||||||| |||||| ||| ||| || ||||||| | | |||||||| Sbjct 5102 GTGTGGCTAATCATCCTCTCGGACCAGCTACTGATTATCACCTTGGTAAACTATTACCTC 5161 Query 180 ACCAACTAGCTAA 192 ||||||| |||| Sbjct 5162 GCCAACTAACTAA 5174 >seq104209 Length=6530 Score = 105 bits (116), Expect = 1e-20 Identities = 90/110 (82%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 || |||| |||| ||||||||||||| |||||| |||| || |||| |||||||||| Sbjct 2690 CATTGCTACCTCT-GTAGGAGTCTGGATTGTGTCTTAGTTTCAATGTGGTTGATCATCCT 2632 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACT 186 || |||||| ||| |||| ||| |||| | || |||||||||||||||| Sbjct 2631 CTTAGACCACTTAATGATCATCGTCTTGATAAGTCATTACCTCACCAACT 2582 >seq86144 Length=5127 Score = 98.7 bits (108), Expect = 2e-18 Identities = 100/128 (78%), Gaps = 3/128 (2%) Strand=Plus/Minus Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTC--AGTTCCAGTGTGA 125 || ||| ||| |||| | ||| || |||||||| ||||||| |||| || |||| Sbjct 1258 AAAATTTTCCATTGCTACTTCCA-TATGAGTCTGGGTTGTGTCTCTTAGTTTCAATGTGG 1200 Query 126 CTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAAC 185 |||||||||||| |||||| ||| |||| ||| |||| | || ||||||||||||||| Sbjct 1199 TTGATCATCCTCTTAGACCACTTAATGATCATCGTCTTGATAAGTCATTACCTCACCAAC 1140 Query 186 TAGCTAAT 193 ||| |||| Sbjct 1139 TAGTTAAT 1132 >seq134173 Length=6119 Score = 89.7 bits (98), Expect = 1e-15 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 80 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTC 139 || || ||||||||||||||| | |||||||||| ||| ||| ||||||| |||| Sbjct 5781 TGTTGTCTCCCGTAGGAGTCTAGGTAGTGTCTCAGTCCCAAGGTGGTTGATCATTCTCTG 5722 Query 140 AGACCAGTTACGGATCGTCGCCTTGGTGAGCC--ATTACCTCACCAACTAGCTAATCCGA 197 ||| || || || | || |||||| |||| ||| ||||||||| ||||||||| || Sbjct 5721 AGATCACATATTGACCATCATCTTGGTAAGCCATATTGCCTCACCAAGTAGCTAATCAGA 5662 Query 198 C 198 | Sbjct 5661 C 5661 >seq134249 Length=2780 Score = 87.8 bits (96), Expect = 4e-15 Identities = 115/158 (73%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 36 CATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGG 95 ||||| || || ||||||| ||||||| || ||| |||| || || ||||| |||| Sbjct 2189 CATTG-CTCCATTAGGCTTTTACCCATTGCGAAAAATTTCCCATTGTTGTCTCCCATAGG 2247 Query 96 AGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATC 155 ||| | | | || | ||| |||||| | ||| |||||||| ||| | ||| |||| Sbjct 2248 AGTTTAGGCATTGCTTTAGTCTTAGTGTGGTTTATCGTCCTCTCACACCCGGTACTGATC 2307 Query 156 GTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 | |||||| | | | ||| |||||||||||| |||| Sbjct 2308 ATTGCCTTGATAAACTATTGTCTCACCAACTAGTTAAT 2345 >seq209983 Length=10699 Score = 84.2 bits (92), Expect = 5e-14 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| || | | |||| |||||| ||||||||||||||| ||| |||||| Sbjct 6431 CCTTCTT-CACTCATGTGATATTGT-TGGATCGGGCTTTCGCCCATTGATCAAGATTCCC 6488 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 || || |||| | ||| ||||| || ||||| ||| | ||| |||| || ||||| | Sbjct 6489 CATTGTTGCCCCTCGTGGGAGTTCGGGTCGTGTTTCAATCCCAATGTGGCTTATCATTCG 6548 Query 137 CTCAGACCAGTTA 149 ||||||| || Sbjct 6549 AAAAGACCAGCTA 6561 >seq165872 Length=7112 Score = 84.2 bits (92), Expect = 5e-14 Identities = 114/158 (72%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 36 CATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGG 95 ||||| || || ||||||| ||||||| || ||| |||| || || ||||| |||| Sbjct 3619 CATTG-CTCCATTAGGCTTTTACCCATTGCGGAAAATTTCCCATTGTTGTCTCCCATAGG 3677 Query 96 AGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATC 155 ||| | | | || | ||| | |||| | |||||||||||| ||| | ||| | | Sbjct 3678 AGTTTAGGCATTGCTTTAGTCTTAATGTGGTTTATCATCCTCTCACACCCGGTACTAACC 3737 Query 156 GTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 | |||||| | | | ||| ||||||||||||||||| Sbjct 3738 ATTGCCTTGATAAACTATTGTCTCACCAACTAGCTAAT 3775 >seq140733 Length=6076 Score = 82.4 bits (90), Expect = 2e-13 Identities = 89/117 (76%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 80 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTC 139 || || ||||||||||||||| | |||||||||| ||| ||| ||||||| || | Sbjct 338 TGTTGTCTCCCGTAGGAGTCTAGGTAGTGTCTCAGTCCCAAGGTGGTTGATCATTCTATT 397 Query 140 AGACCAGTTACGGATCGTCGCCTTGGTGAGCC--ATTACCTCACCAACTAGCTAATC 194 ||| || || || | || |||||| |||| ||| ||||||||| ||||||||| Sbjct 398 AGATCACATATTGACCATCATCTTGGTAAGCCATATTGCCTCACCAAGTAGCTAATC 454 >seq170456 Length=1356 Score = 77.0 bits (84), Expect = 7e-12 Identities = 74/94 (79%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 31 CGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCC 90 |||| ||||| || ||||| |||| ||| ||| || |||||||| |||| | |||| Sbjct 949 CGCGACATTG-CTCTATCAGACTTTTGCCAGTTGCGAAAAATTCCCCATTGCTACTTCCC 1007 Query 91 GTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 124 |||||||| | ||| |||||||||| | |||||| Sbjct 1008 GTAGGAGTTTAGACTGTGTCTCAGTCCTAGTGTG 1041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1069744040320