Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1
_202015-09-10] 210,444 sequences; 539,624,286 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq120100 174 3e-41
seq170457 140 7e-31
seq171107 136 8e-30
seq139780 123 5e-26
seq104209 105 1e-20
seq86144 98.7 2e-18
seq134173 89.7 1e-15
seq134249 87.8 4e-15
seq209983 84.2 5e-14
seq165872 84.2 5e-14
seq140733 82.4 2e-13
seq170456 77.0 7e-12
>seq120100
Length=747
Score = 174 bits (192), Expect = 3e-41
Identities = 150/177 (85%), Gaps = 8/177 (5%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATC-AGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCT 87
||||||||||| ||| || |||||||||||||||| || |||||||||||||||||
Sbjct 126 CACGCGGCATT-GCTCCGTCTAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCT 184
Query 88 CCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT-GTGACTGATC-ATCCTCTCAGACCA 145
||||||||||||||| |||||||||||| ||||| ||| |||||| |||||||| |||||
Sbjct 185 CCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTCGTGGCTGATCTATCCTCTCGGACCA 244
Query 146 GTTAC--GGATCGTCGCCTTGGTGAGCCATTACCTC-ACCAACTAGCTAATCCGACC 199
| ||| | ||| || ||||||| ||| || |||| ||||||||||||||| ||||
Sbjct 245 GCTACGTGCATCATCTCCTTGGT-AGCTATCGCCTCAACCAACTAGCTAATCAGACC 300
>seq170457
Length=565
Score = 140 bits (154), Expect = 7e-31
Identities = 118/145 (81%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 48 CAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGT 107
||||||||||||| |||| || |||||||| ||||| ||||||||||||| | ||| ||
Sbjct 107 CAGGCTTTCGCCCGTTGTGAAAAATTCCCCATTGCTGTCTCCCGTAGGAGTTTAGACTGT 166
Query 108 GTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTG 167
|||||||| | |||||| ||||| | |||||||| ||| |||| ||| ||||||
Sbjct 167 GTCTCAGTCCTAGTGTGGTCAATCATTTTATCAGACCAACTACTGATCATCGTCTTGGTA 226
Query 168 AGCCATTACCTCACCAACTAGCTAA 192
||| ||| ||| |||||||||||||
Sbjct 227 AGCTATTGCCTTACCAACTAGCTAA 251
>seq171107
Length=3864
Score = 136 bits (150), Expect = 8e-30
Identities = 119/148 (80%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 46 ATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACC 105
||||||||||| |||||||| || |||||||||| |||||| ||| |||| ||| ||
Sbjct 1516 ATCAGGCTTTCTCCCATTGTAGAAAATTCCCCACTATTGCCTCTTGTAAGAGTTTGGGCC 1457
Query 106 GTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGG 165
|||||||||| | |||||| || ||||| ||||| |||||| || ||| || ||||||
Sbjct 1456 GTGTCTCAGTCCTAGTGTGGCTAATCATTCTCTCGGACCAGCTATTGATTATCACCTTGG 1397
Query 166 TGAGCCATTACCTCACCAACTAGCTAAT 193
| | | |||||||| ||||||| ||||
Sbjct 1396 TAAACTATTACCTCGCCAACTAATTAAT 1369
>seq139780
Length=6461
Score = 123 bits (136), Expect = 5e-26
Identities = 107/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 60 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 119
||||| || ||||||| ||| |||||| ||| |||| ||| |||||||||||| | |
Sbjct 5042 CATTGCAGAAAATTCCCCCCTGTTGCCTCTTGTAAGAGTTTGGGCCGTGTCTCAGTCCTA 5101
Query 120 GTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTC 179
||||| || ||||||||||| |||||| ||| ||| || ||||||| | | ||||||||
Sbjct 5102 GTGTGGCTAATCATCCTCTCGGACCAGCTACTGATTATCACCTTGGTAAACTATTACCTC 5161
Query 180 ACCAACTAGCTAA 192
||||||| ||||
Sbjct 5162 GCCAACTAACTAA 5174
>seq104209
Length=6530
Score = 105 bits (116), Expect = 1e-20
Identities = 90/110 (82%), Gaps = 1/110 (1%)
Strand=Plus/Minus
Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136
|| |||| |||| ||||||||||||| |||||| |||| || |||| ||||||||||
Sbjct 2690 CATTGCTACCTCT-GTAGGAGTCTGGATTGTGTCTTAGTTTCAATGTGGTTGATCATCCT 2632
Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACT 186
|| |||||| ||| |||| ||| |||| | || ||||||||||||||||
Sbjct 2631 CTTAGACCACTTAATGATCATCGTCTTGATAAGTCATTACCTCACCAACT 2582
>seq86144
Length=5127
Score = 98.7 bits (108), Expect = 2e-18
Identities = 100/128 (78%), Gaps = 3/128 (2%)
Strand=Plus/Minus
Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTC--AGTTCCAGTGTGA 125
|| ||| ||| |||| | ||| || |||||||| ||||||| |||| || ||||
Sbjct 1258 AAAATTTTCCATTGCTACTTCCA-TATGAGTCTGGGTTGTGTCTCTTAGTTTCAATGTGG 1200
Query 126 CTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAAC 185
|||||||||||| |||||| ||| |||| ||| |||| | || |||||||||||||||
Sbjct 1199 TTGATCATCCTCTTAGACCACTTAATGATCATCGTCTTGATAAGTCATTACCTCACCAAC 1140
Query 186 TAGCTAAT 193
||| ||||
Sbjct 1139 TAGTTAAT 1132
>seq134173
Length=6119
Score = 89.7 bits (98), Expect = 1e-15
Identities = 93/121 (77%), Gaps = 2/121 (2%)
Strand=Plus/Minus
Query 80 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTC 139
|| || ||||||||||||||| | |||||||||| ||| ||| ||||||| ||||
Sbjct 5781 TGTTGTCTCCCGTAGGAGTCTAGGTAGTGTCTCAGTCCCAAGGTGGTTGATCATTCTCTG 5722
Query 140 AGACCAGTTACGGATCGTCGCCTTGGTGAGCC--ATTACCTCACCAACTAGCTAATCCGA 197
||| || || || | || |||||| |||| ||| ||||||||| ||||||||| ||
Sbjct 5721 AGATCACATATTGACCATCATCTTGGTAAGCCATATTGCCTCACCAAGTAGCTAATCAGA 5662
Query 198 C 198
|
Sbjct 5661 C 5661
>seq134249
Length=2780
Score = 87.8 bits (96), Expect = 4e-15
Identities = 115/158 (73%), Gaps = 1/158 (1%)
Strand=Plus/Plus
Query 36 CATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGG 95
||||| || || ||||||| ||||||| || ||| |||| || || ||||| ||||
Sbjct 2189 CATTG-CTCCATTAGGCTTTTACCCATTGCGAAAAATTTCCCATTGTTGTCTCCCATAGG 2247
Query 96 AGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATC 155
||| | | | || | ||| |||||| | ||| |||||||| ||| | ||| ||||
Sbjct 2248 AGTTTAGGCATTGCTTTAGTCTTAGTGTGGTTTATCGTCCTCTCACACCCGGTACTGATC 2307
Query 156 GTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193
| |||||| | | | ||| |||||||||||| ||||
Sbjct 2308 ATTGCCTTGATAAACTATTGTCTCACCAACTAGTTAAT 2345
>seq209983
Length=10699
Score = 84.2 bits (92), Expect = 5e-14
Identities = 100/133 (75%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76
||||||| ||| || | | |||| |||||| ||||||||||||||| ||| ||||||
Sbjct 6431 CCTTCTT-CACTCATGTGATATTGT-TGGATCGGGCTTTCGCCCATTGATCAAGATTCCC 6488
Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136
|| || |||| | ||| ||||| || ||||| ||| | ||| |||| || ||||| |
Sbjct 6489 CATTGTTGCCCCTCGTGGGAGTTCGGGTCGTGTTTCAATCCCAATGTGGCTTATCATTCG 6548
Query 137 CTCAGACCAGTTA 149
||||||| ||
Sbjct 6549 AAAAGACCAGCTA 6561
>seq165872
Length=7112
Score = 84.2 bits (92), Expect = 5e-14
Identities = 114/158 (72%), Gaps = 1/158 (1%)
Strand=Plus/Plus
Query 36 CATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGG 95
||||| || || ||||||| ||||||| || ||| |||| || || ||||| ||||
Sbjct 3619 CATTG-CTCCATTAGGCTTTTACCCATTGCGGAAAATTTCCCATTGTTGTCTCCCATAGG 3677
Query 96 AGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATC 155
||| | | | || | ||| | |||| | |||||||||||| ||| | ||| | |
Sbjct 3678 AGTTTAGGCATTGCTTTAGTCTTAATGTGGTTTATCATCCTCTCACACCCGGTACTAACC 3737
Query 156 GTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193
| |||||| | | | ||| |||||||||||||||||
Sbjct 3738 ATTGCCTTGATAAACTATTGTCTCACCAACTAGCTAAT 3775
>seq140733
Length=6076
Score = 82.4 bits (90), Expect = 2e-13
Identities = 89/117 (76%), Gaps = 2/117 (2%)
Strand=Plus/Plus
Query 80 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTC 139
|| || ||||||||||||||| | |||||||||| ||| ||| ||||||| || |
Sbjct 338 TGTTGTCTCCCGTAGGAGTCTAGGTAGTGTCTCAGTCCCAAGGTGGTTGATCATTCTATT 397
Query 140 AGACCAGTTACGGATCGTCGCCTTGGTGAGCC--ATTACCTCACCAACTAGCTAATC 194
||| || || || | || |||||| |||| ||| ||||||||| |||||||||
Sbjct 398 AGATCACATATTGACCATCATCTTGGTAAGCCATATTGCCTCACCAAGTAGCTAATC 454
>seq170456
Length=1356
Score = 77.0 bits (84), Expect = 7e-12
Identities = 74/94 (79%), Gaps = 1/94 (1%)
Strand=Plus/Plus
Query 31 CGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCC 90
|||| ||||| || ||||| |||| ||| ||| || |||||||| |||| | ||||
Sbjct 949 CGCGACATTG-CTCTATCAGACTTTTGCCAGTTGCGAAAAATTCCCCATTGCTACTTCCC 1007
Query 91 GTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 124
|||||||| | ||| |||||||||| | ||||||
Sbjct 1008 GTAGGAGTTTAGACTGTGTCTCAGTCCTAGTGTG 1041
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1069744040320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |