Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1
_202015-09-10] 210,444 sequences; 539,624,286 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq74092 147 8e-33
seq130893 109 2e-21
seq105314 109 2e-21
seq144769 107 7e-21
seq52100 91.5 5e-16
seq89345 77.0 1e-11
>seq74092
Length=2799
Score = 147 bits (162), Expect = 8e-33
Identities = 357/529 (67%), Gaps = 49/529 (9%)
Strand=Plus/Minus
Query 85 TGTGGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCAC 143
|| ||||| |||||| |||| ||||||||||||| || | ||| ||||| ||
Sbjct 1434 TGGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTAC 1375
Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203
|||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| |
Sbjct 1374 TGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGC 1315
Query 204 CACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACG--CGGTCTTAC 261
|||| ||||||||| | ||| | || || ||||||||||||||||| | | || |
Sbjct 1314 CACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCAGTAAGA- 1256
Query 262 CCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCA 321
| | ||||||||||| ||||| |||||| | | |||||||| || | | |
Sbjct 1255 GCTCTCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAGGAAGAACTA 1197
Query 322 TACGCCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGAC 379
| | |||| || || | | | || |||| || | || |||| || | |
Sbjct 1196 GAAG----ATTC-CAC---CTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTC 1145
Query 380 ACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTAC------ 431
|| | ||||| | | ||| | ||||||| ||||||| | || || |
Sbjct 1144 CCATTTC---CTCGCTGACCCATCATGCAAAAGGTACGCCGTTAGAGTGAGTGCGCTTTA 1088
Query 432 CTA--------------AAAGGCACT----TCAGCTC---CGACGGATTGTAGGCACATG 470
||| |||||| || || |||| |||| |||||| ||| |
Sbjct 1087 CTAATAGAATCTAAAGTAAAGGCTCTAAGCTCCGCTCCTTCGACTGATTGTTCGCATCGG 1028
Query 471 GTTTCAGGT--ACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTAC 528
| |||||| ||||| ||||||| |||| ||||||||||||||||||||||||
Sbjct 1027 ATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTCTTTTCACCTTTCCCTCACGGTAC 968
Query 529 TTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCC 577
|||| |||||||||||| |||| || ||||||||| ||||||||||
Sbjct 967 TTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGGGTGGTCCC 919
>seq130893
Length=4206
Score = 109 bits (120), Expect = 2e-21
Identities = 116/153 (76%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 152 ATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTC 211
|||| ||||||||||| ||||| | |||||||| |||| ||||||||||| |||| ||
Sbjct 3019 ATTTTGGGGAGAACCAACTATCTCTAAGTTTGAGTGGCATTTCACCCCTAATCACAACTC 3078
Query 212 ATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCA 271
|| || | | |||||| | | | | || || ||||||| ||| | |||| ||||||
Sbjct 3079 ATTGGCTTATTCTTCAACATCAATTGATTTGGACCTCCACTTGGTTTCACCCAAGCTTCA 3138
Query 272 ACCTGCCCATGGATAGATCACTTCGCTTCGGGT 304
||| ||| ||||||||||| | |||||||
Sbjct 3139 TCCTAGTTATGAATAGATCACTTAGGTTCGGGT 3171
>seq105314
Length=5322
Score = 109 bits (120), Expect = 2e-21
Identities = 127/170 (75%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195
|| ||| ||| || ||||||| ||||||| ||||| | |||||| || | |||||
Sbjct 5149 CGTTGCGCCTCAACGCATTTCAAGGAGAACTAGCTAGCTTTCGGTTTGAGTGACATTTCA 5208
Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255
||| || ||||| |||||| || | |||||||| | | | |||| || ||||||| |
Sbjct 5209 CCC-TAACCACAACTCATCCACTGACTTTTCAACATCACTCGGTTTGGACCTCCACTTAG 5267
Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305
| | |||| |||||| |||| |||||||||||||| | ||||||||
Sbjct 5268 TTTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTC 5317
>seq144769
Length=10391
Score = 107 bits (118), Expect = 7e-21
Identities = 115/152 (76%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 143 CCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTAT 202
||| |||| |||||| |||||| | || | | | | ||| || || | ||||| |||||
Sbjct 5715 CCTCAATGTATTTCGAGGAGAATCGGCCAGCTCTAGGTTCGAGTGACATTTCAACCCTAA 5774
Query 203 CCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACC 262
||| | ||||||||| | | |||||| | ||| ||||||| ||| ||| || | |||
Sbjct 5775 CCATAACTCATCCCCTGATTCTTCAACATCAGTCGGTTCGGACCTTCACATAGTTTCACC 5834
Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTT 294
| |||||| |||| ||||||||||||||||
Sbjct 5835 CAAGCTTCATCCTGATCATGGATAGATCACTT 5866
>seq52100
Length=4410
Score = 91.5 bits (100), Expect = 5e-16
Identities = 76/93 (82%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 472 TTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTG 531
||||| || |||||||||| |||| ||||| ||||||| | |||| |||| ||||| |
Sbjct 3923 TTTCATGTTCTATTTCACTTCCCGATGGGGGTTCTTTTCATCGTTCCTTCACAGTACTAG 3982
Query 532 TCCGCTATCGGTCACCAAGGAGTATTTAGGCTT 564
| | |||||||||| | |||||||||||| |||
Sbjct 3983 TTCACTATCGGTCATCCAGGAGTATTTAGTCTT 4015
Score = 75.2 bits (82), Expect = 4e-11
Identities = 77/101 (76%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 151 CATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGT 210
||||||||||| ||| ||||| | | ||| | |||| ||||||||||| ||||| |
Sbjct 3646 CATTTCGGGGATAACTAGCTAGTTCTAGGTTCAAGTGGCATTTCACCCCTAACCACAACT 3705
Query 211 CATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCAC 251
||||| | | | |||||| | ||| |||| || |||||||
Sbjct 3706 CATCCGTTGATTCTTCAACATCAGTCGGTTTGGACCTCCAC 3746
>seq89345
Length=8457
Score = 77.0 bits (84), Expect = 1e-11
Identities = 107/150 (71%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 143 CCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTAT 202
||| |||| ||||||| ||||| | |||| | | ||| || || | ||||| |||||
Sbjct 5284 CCTCAATGTATTTCGGAGAGAATCGGCTAGCTTTAGGTTCGAGTGACATTTCAACCCTAA 5225
Query 203 CCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACC 262
||||| |||||| | | | || ||| | ||| || || ||| ||| || | |||
Sbjct 5224 CCACAACTCATCCGTTGATTCTTTAACATCAGTCAATTTGGACCTTCACTTAGTTTCACC 5165
Query 263 CGCGCTTCAACCTGCCCATGGATAGATCAC 292
| |||||| | || ||||||||||||||
Sbjct 5164 CAAGCTTCATCTTGATCATGGATAGATCAC 5135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1813774969856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |