Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq74092 147 8e-33 seq130893 109 2e-21 seq105314 109 2e-21 seq144769 107 7e-21 seq52100 91.5 5e-16 seq89345 77.0 1e-11 >seq74092 Length=2799 Score = 147 bits (162), Expect = 8e-33 Identities = 357/529 (67%), Gaps = 49/529 (9%) Strand=Plus/Minus Query 85 TGTGGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCAC 143 || ||||| |||||| |||| ||||||||||||| || | ||| ||||| || Sbjct 1434 TGGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTAC 1375 Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203 |||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| | Sbjct 1374 TGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGC 1315 Query 204 CACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACG--CGGTCTTAC 261 |||| ||||||||| | ||| | || || ||||||||||||||||| | | || | Sbjct 1314 CACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCAGTAAGA- 1256 Query 262 CCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCA 321 | | ||||||||||| ||||| |||||| | | |||||||| || | | | Sbjct 1255 GCTCTCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAGGAAGAACTA 1197 Query 322 TACGCCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGAC 379 | | |||| || || | | | || |||| || | || |||| || | | Sbjct 1196 GAAG----ATTC-CAC---CTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTC 1145 Query 380 ACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTAC------ 431 || | ||||| | | ||| | ||||||| ||||||| | || || | Sbjct 1144 CCATTTC---CTCGCTGACCCATCATGCAAAAGGTACGCCGTTAGAGTGAGTGCGCTTTA 1088 Query 432 CTA--------------AAAGGCACT----TCAGCTC---CGACGGATTGTAGGCACATG 470 ||| |||||| || || |||| |||| |||||| ||| | Sbjct 1087 CTAATAGAATCTAAAGTAAAGGCTCTAAGCTCCGCTCCTTCGACTGATTGTTCGCATCGG 1028 Query 471 GTTTCAGGT--ACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTAC 528 | |||||| ||||| ||||||| |||| |||||||||||||||||||||||| Sbjct 1027 ATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTCTTTTCACCTTTCCCTCACGGTAC 968 Query 529 TTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCC 577 |||| |||||||||||| |||| || ||||||||| |||||||||| Sbjct 967 TTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGGGTGGTCCC 919 >seq130893 Length=4206 Score = 109 bits (120), Expect = 2e-21 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 152 ATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTC 211 |||| ||||||||||| ||||| | |||||||| |||| ||||||||||| |||| || Sbjct 3019 ATTTTGGGGAGAACCAACTATCTCTAAGTTTGAGTGGCATTTCACCCCTAATCACAACTC 3078 Query 212 ATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCA 271 || || | | |||||| | | | | || || ||||||| ||| | |||| |||||| Sbjct 3079 ATTGGCTTATTCTTCAACATCAATTGATTTGGACCTCCACTTGGTTTCACCCAAGCTTCA 3138 Query 272 ACCTGCCCATGGATAGATCACTTCGCTTCGGGT 304 ||| ||| ||||||||||| | ||||||| Sbjct 3139 TCCTAGTTATGAATAGATCACTTAGGTTCGGGT 3171 >seq105314 Length=5322 Score = 109 bits (120), Expect = 2e-21 Identities = 127/170 (75%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 || ||| ||| || ||||||| ||||||| ||||| | |||||| || | ||||| Sbjct 5149 CGTTGCGCCTCAACGCATTTCAAGGAGAACTAGCTAGCTTTCGGTTTGAGTGACATTTCA 5208 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 ||| || ||||| |||||| || | |||||||| | | | |||| || ||||||| | Sbjct 5209 CCC-TAACCACAACTCATCCACTGACTTTTCAACATCACTCGGTTTGGACCTCCACTTAG 5267 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 | | |||| |||||| |||| |||||||||||||| | |||||||| Sbjct 5268 TTTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTC 5317 >seq144769 Length=10391 Score = 107 bits (118), Expect = 7e-21 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 143 CCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTAT 202 ||| |||| |||||| |||||| | || | | | | ||| || || | ||||| ||||| Sbjct 5715 CCTCAATGTATTTCGAGGAGAATCGGCCAGCTCTAGGTTCGAGTGACATTTCAACCCTAA 5774 Query 203 CCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACC 262 ||| | ||||||||| | | |||||| | ||| ||||||| ||| ||| || | ||| Sbjct 5775 CCATAACTCATCCCCTGATTCTTCAACATCAGTCGGTTCGGACCTTCACATAGTTTCACC 5834 Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTT 294 | |||||| |||| |||||||||||||||| Sbjct 5835 CAAGCTTCATCCTGATCATGGATAGATCACTT 5866 >seq52100 Length=4410 Score = 91.5 bits (100), Expect = 5e-16 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 472 TTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTG 531 ||||| || |||||||||| |||| ||||| ||||||| | |||| |||| ||||| | Sbjct 3923 TTTCATGTTCTATTTCACTTCCCGATGGGGGTTCTTTTCATCGTTCCTTCACAGTACTAG 3982 Query 532 TCCGCTATCGGTCACCAAGGAGTATTTAGGCTT 564 | | |||||||||| | |||||||||||| ||| Sbjct 3983 TTCACTATCGGTCATCCAGGAGTATTTAGTCTT 4015 Score = 75.2 bits (82), Expect = 4e-11 Identities = 77/101 (76%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 151 CATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGT 210 ||||||||||| ||| ||||| | | ||| | |||| ||||||||||| ||||| | Sbjct 3646 CATTTCGGGGATAACTAGCTAGTTCTAGGTTCAAGTGGCATTTCACCCCTAACCACAACT 3705 Query 211 CATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCAC 251 ||||| | | | |||||| | ||| |||| || ||||||| Sbjct 3706 CATCCGTTGATTCTTCAACATCAGTCGGTTTGGACCTCCAC 3746 >seq89345 Length=8457 Score = 77.0 bits (84), Expect = 1e-11 Identities = 107/150 (71%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 143 CCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTAT 202 ||| |||| ||||||| ||||| | |||| | | ||| || || | ||||| ||||| Sbjct 5284 CCTCAATGTATTTCGGAGAGAATCGGCTAGCTTTAGGTTCGAGTGACATTTCAACCCTAA 5225 Query 203 CCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACC 262 ||||| |||||| | | | || ||| | ||| || || ||| ||| || | ||| Sbjct 5224 CCACAACTCATCCGTTGATTCTTTAACATCAGTCAATTTGGACCTTCACTTAGTTTCACC 5165 Query 263 CGCGCTTCAACCTGCCCATGGATAGATCAC 292 | |||||| | || |||||||||||||| Sbjct 5164 CAAGCTTCATCTTGATCATGGATAGATCAC 5135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1813774969856