Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1
_202015-09-10] 210,444 sequences; 539,624,286 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq52100 104 6e-20
seq74092 102 2e-19
>seq52100
Length=4410
Score = 104 bits (114), Expect = 6e-20
Identities = 140/192 (73%), Gaps = 6/192 (3%)
Strand=Plus/Plus
Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC--CCAACAAAG 245
||||||| |||| || | || |||| | ||| ||| ||||| ||| || ||
Sbjct 3838 GCCACTGCTTATAAATCTCCAACTCATTCTTCAATAGGCACGCAATCAGAGCCCTCA--- 3894
Query 246 TGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305
| || ||||| ||| | | ||| ||||| | ||||||||||| ||| | ||||
Sbjct 3895 TCTCCTTCCACTACTTATGAACTTACAATTTCATGTTCTATTTCACTTCCCGATG-GGGG 3953
Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365
|||||||| | |||| |||| ||||||||||||||||||||| ||| ||||||||| |
Sbjct 3954 TTCTTTTCATCGTTCCTTCACAGTACTAGTTCACTATCGGTCATCCAGGAGTATTTAGTC 4013
Query 366 TTGGAGGATGGT 377
||| | | ||||
Sbjct 4014 TTGCAAGGTGGT 4025
>seq74092
Length=2799
Score = 102 bits (112), Expect = 2e-19
Identities = 102/130 (78%), Gaps = 3/130 (2%)
Strand=Plus/Minus
Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312
|||| |||| ||||| | | ||||| ||| ||| ||||||| | ||||||||||
Sbjct 1045 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 987
Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372
| |||||||||||||||||| || | |||||||||| | || | || |||| ||| ||||
Sbjct 986 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 927
Query 373 ATGGTCCCCC 382
|||||||||
Sbjct 926 GTGGTCCCCC 917
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1238987127296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |