Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq52100 104 6e-20 seq74092 102 2e-19 >seq52100 Length=4410 Score = 104 bits (114), Expect = 6e-20 Identities = 140/192 (73%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC--CCAACAAAG 245 ||||||| |||| || | || |||| | ||| ||| ||||| ||| || || Sbjct 3838 GCCACTGCTTATAAATCTCCAACTCATTCTTCAATAGGCACGCAATCAGAGCCCTCA--- 3894 Query 246 TGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | || ||||| ||| | | ||| ||||| | ||||||||||| ||| | |||| Sbjct 3895 TCTCCTTCCACTACTTATGAACTTACAATTTCATGTTCTATTTCACTTCCCGATG-GGGG 3953 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| | |||| |||| ||||||||||||||||||||| ||| ||||||||| | Sbjct 3954 TTCTTTTCATCGTTCCTTCACAGTACTAGTTCACTATCGGTCATCCAGGAGTATTTAGTC 4013 Query 366 TTGGAGGATGGT 377 ||| | | |||| Sbjct 4014 TTGCAAGGTGGT 4025 >seq74092 Length=2799 Score = 102 bits (112), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 1045 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 987 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 986 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 927 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 926 GTGGTCCCCC 917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1238987127296