Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1
_202015-09-10] 210,444 sequences; 539,624,286 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq120100 138 2e-30
seq171107 122 2e-25
seq170457 120 6e-25
seq139780 100 6e-19
seq165872 78.8 2e-12
seq134249 73.4 8e-11
>seq120100
Length=747
Score = 138 bits (152), Expect = 2e-30
Identities = 145/182 (80%), Gaps = 8/182 (4%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATC-AGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTA 59
||| | ||| | || ||| |||| ||||||| | || || ||||||||||||||||||||
Sbjct 131 GGCATTGCTCCGTCTAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTA 190
Query 60 GGAGTCTGGGCCGTGTCTCAGTCCCAAT-GTGGCCGTTC-AACCTCTCAGTCCGGCTAC- 116
|||||||||||||||||||||||||| | ||||| | || | |||||| | || |||||
Sbjct 191 GGAGTCTGGGCCGTGTCTCAGTCCCAGTCGTGGCTGATCTATCCTCTCGGACCAGCTACG 250
Query 117 -CGATCGTCGGCTTGGTGGGCTATTATCTC-ACCAACTACCTAATC-GGCCGCGAGCCCA 173
||| || |||||| ||||| ||| |||||||| |||||| | ||||||||||
Sbjct 251 TGCATCATCTCCTTGGT-AGCTATCGCCTCAACCAACTAGCTAATCAGACCGCGAGCCCC 309
Query 174 TC 175
||
Sbjct 310 TC 311
>seq171107
Length=3864
Score = 122 bits (134), Expect = 2e-25
Identities = 130/172 (76%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
||| ||||||| |||| |||||||| || || ||||||| |||||| ||| |||| |
Sbjct 1521 GCTCCATCAGGCTTTCTCCCATTGTAGAAAATTCCCCACTATTGCCTCTTGTAAGAGTTT 1462
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
||||||||||||||||| | |||||| ||| ||||| | || |||| ||| ||
Sbjct 1461 GGGCCGTGTCTCAGTCCTAGTGTGGCTAATCATTCTCTCGGACCAGCTATTGATTATCAC 1402
Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTT 178
|||||| |||||| ||| ||||||| |||| | | ||||||| ||||
Sbjct 1401 CTTGGTAAACTATTACCTCGCCAACTAATTAATAAGACAGGAGCCCAACTTT 1350
>seq170457
Length=565
Score = 120 bits (132), Expect = 6e-25
Identities = 198/283 (70%), Gaps = 16/283 (6%)
Strand=Plus/Plus
Query 14 CAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGT 73
|||| |||| ||| ||||| || || ||||| ||||| ||||||||||||| | | | ||
Sbjct 107 CAGGCTTTCGCCCGTTGTGAAAAATTCCCCATTGCTGTCTCCCGTAGGAGTTTAGACTGT 166
Query 74 GTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTG 133
|||||||||| | ||||| | ||| | |||| || |||| |||| ||| ||||||
Sbjct 167 GTCTCAGTCCTAGTGTGGTCAATCATTTTATCAGACCAACTACTGATCATCGTCTTGGTA 226
Query 134 GGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTTT 193
|||||| || |||||||| |||| | | |||||| || | ||| | || |
Sbjct 227 AGCTATTGCCTTACCAACTAGCTAAAGAGATGTGAGCCCCTCATCGGGCG--GATTCCT- 283
Query 194 GGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTT 253
|| ||| ||||| | | || | ||||||||| |||||||| |||
Sbjct 284 --------CATTTTGC--TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTT 331
Query 254 ATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGT 296
|||| ||| || |||||||| || ||| ||||| ||||||
Sbjct 332 GTTCCCCTCCCAAGGGCAGGTT-CTTACGCATTACTGACCCGT 373
>seq139780
Length=6461
Score = 100 bits (110), Expect = 6e-19
Identities = 102/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 26 CATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCA 85
||||| || || |||| ||| |||||| ||| |||| |||||||||||||||||| |
Sbjct 5042 CATTGCAGAAAATTCCCCCCTGTTGCCTCTTGTAAGAGTTTGGGCCGTGTCTCAGTCCTA 5101
Query 86 ATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTC 145
|||||| ||| |||||| | || ||||| ||| || |||||| |||||| |||
Sbjct 5102 GTGTGGCTAATCATCCTCTCGGACCAGCTACTGATTATCACCTTGGTAAACTATTACCTC 5161
Query 146 ACCAACTACCTAA 158
||||||| ||||
Sbjct 5162 GCCAACTAACTAA 5174
>seq165872
Length=7112
Score = 78.8 bits (86), Expect = 2e-12
Identities = 109/153 (71%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
||| ||| ||| ||| ||||||| | || || |||| || || ||||| ||||||| |
Sbjct 3623 GCTCCATTAGGCTTTTACCCATTGCGGAAAATTTCCCATTGTTGTCTCCCATAGGAGTTT 3682
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
||| || | |||| ||||||| ||| ||||||| || | ||| | | | |
Sbjct 3683 AGGCATTGCTTTAGTCTTAATGTGGTTTATCATCCTCTCACACCCGGTACTAACCATTGC 3742
Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159
|||| | ||||| |||||||||||| |||||
Sbjct 3743 CTTGATAAACTATTGTCTCACCAACTAGCTAAT 3775
>seq134249
Length=2780
Score = 73.4 bits (80), Expect = 8e-11
Identities = 108/153 (71%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
||| ||| ||| ||| ||||||| | || || |||| || || ||||| ||||||| |
Sbjct 2193 GCTCCATTAGGCTTTTACCCATTGCGAAAAATTTCCCATTGTTGTCTCCCATAGGAGTTT 2252
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
||| || | |||| | ||||| || ||||||| || | ||| |||| | |
Sbjct 2253 AGGCATTGCTTTAGTCTTAGTGTGGTTTATCGTCCTCTCACACCCGGTACTGATCATTGC 2312
Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159
|||| | ||||| |||||||||||| ||||
Sbjct 2313 CTTGATAAACTATTGTCTCACCAACTAGTTAAT 2345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 996298927104
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |