Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq120100 138 2e-30 seq171107 122 2e-25 seq170457 120 6e-25 seq139780 100 6e-19 seq165872 78.8 2e-12 seq134249 73.4 8e-11 >seq120100 Length=747 Score = 138 bits (152), Expect = 2e-30 Identities = 145/182 (80%), Gaps = 8/182 (4%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATC-AGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTA 59 ||| | ||| | || ||| |||| ||||||| | || || |||||||||||||||||||| Sbjct 131 GGCATTGCTCCGTCTAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTA 190 Query 60 GGAGTCTGGGCCGTGTCTCAGTCCCAAT-GTGGCCGTTC-AACCTCTCAGTCCGGCTAC- 116 |||||||||||||||||||||||||| | ||||| | || | |||||| | || ||||| Sbjct 191 GGAGTCTGGGCCGTGTCTCAGTCCCAGTCGTGGCTGATCTATCCTCTCGGACCAGCTACG 250 Query 117 -CGATCGTCGGCTTGGTGGGCTATTATCTC-ACCAACTACCTAATC-GGCCGCGAGCCCA 173 ||| || |||||| ||||| ||| |||||||| |||||| | |||||||||| Sbjct 251 TGCATCATCTCCTTGGT-AGCTATCGCCTCAACCAACTAGCTAATCAGACCGCGAGCCCC 309 Query 174 TC 175 || Sbjct 310 TC 311 >seq171107 Length=3864 Score = 122 bits (134), Expect = 2e-25 Identities = 130/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| ||||||| |||| |||||||| || || ||||||| |||||| ||| |||| | Sbjct 1521 GCTCCATCAGGCTTTCTCCCATTGTAGAAAATTCCCCACTATTGCCTCTTGTAAGAGTTT 1462 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||| | |||||| ||| ||||| | || |||| ||| || Sbjct 1461 GGGCCGTGTCTCAGTCCTAGTGTGGCTAATCATTCTCTCGGACCAGCTATTGATTATCAC 1402 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTT 178 |||||| |||||| ||| ||||||| |||| | | ||||||| |||| Sbjct 1401 CTTGGTAAACTATTACCTCGCCAACTAATTAATAAGACAGGAGCCCAACTTT 1350 >seq170457 Length=565 Score = 120 bits (132), Expect = 6e-25 Identities = 198/283 (70%), Gaps = 16/283 (6%) Strand=Plus/Plus Query 14 CAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGT 73 |||| |||| ||| ||||| || || ||||| ||||| ||||||||||||| | | | || Sbjct 107 CAGGCTTTCGCCCGTTGTGAAAAATTCCCCATTGCTGTCTCCCGTAGGAGTTTAGACTGT 166 Query 74 GTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTG 133 |||||||||| | ||||| | ||| | |||| || |||| |||| ||| |||||| Sbjct 167 GTCTCAGTCCTAGTGTGGTCAATCATTTTATCAGACCAACTACTGATCATCGTCTTGGTA 226 Query 134 GGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTTT 193 |||||| || |||||||| |||| | | |||||| || | ||| | || | Sbjct 227 AGCTATTGCCTTACCAACTAGCTAAAGAGATGTGAGCCCCTCATCGGGCG--GATTCCT- 283 Query 194 GGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTT 253 || ||| ||||| | | || | ||||||||| |||||||| ||| Sbjct 284 --------CATTTTGC--TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTT 331 Query 254 ATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGT 296 |||| ||| || |||||||| || ||| ||||| |||||| Sbjct 332 GTTCCCCTCCCAAGGGCAGGTT-CTTACGCATTACTGACCCGT 373 >seq139780 Length=6461 Score = 100 bits (110), Expect = 6e-19 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 26 CATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCA 85 ||||| || || |||| ||| |||||| ||| |||| |||||||||||||||||| | Sbjct 5042 CATTGCAGAAAATTCCCCCCTGTTGCCTCTTGTAAGAGTTTGGGCCGTGTCTCAGTCCTA 5101 Query 86 ATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTC 145 |||||| ||| |||||| | || ||||| ||| || |||||| |||||| ||| Sbjct 5102 GTGTGGCTAATCATCCTCTCGGACCAGCTACTGATTATCACCTTGGTAAACTATTACCTC 5161 Query 146 ACCAACTACCTAA 158 ||||||| |||| Sbjct 5162 GCCAACTAACTAA 5174 >seq165872 Length=7112 Score = 78.8 bits (86), Expect = 2e-12 Identities = 109/153 (71%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| ||| ||| ||| ||||||| | || || |||| || || ||||| ||||||| | Sbjct 3623 GCTCCATTAGGCTTTTACCCATTGCGGAAAATTTCCCATTGTTGTCTCCCATAGGAGTTT 3682 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||| || | |||| ||||||| ||| ||||||| || | ||| | | | | Sbjct 3683 AGGCATTGCTTTAGTCTTAATGTGGTTTATCATCCTCTCACACCCGGTACTAACCATTGC 3742 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||| | ||||| |||||||||||| ||||| Sbjct 3743 CTTGATAAACTATTGTCTCACCAACTAGCTAAT 3775 >seq134249 Length=2780 Score = 73.4 bits (80), Expect = 8e-11 Identities = 108/153 (71%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| ||| ||| ||| ||||||| | || || |||| || || ||||| ||||||| | Sbjct 2193 GCTCCATTAGGCTTTTACCCATTGCGAAAAATTTCCCATTGTTGTCTCCCATAGGAGTTT 2252 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||| || | |||| | ||||| || ||||||| || | ||| |||| | | Sbjct 2253 AGGCATTGCTTTAGTCTTAGTGTGGTTTATCGTCCTCTCACACCCGGTACTGATCATTGC 2312 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||| | ||||| |||||||||||| |||| Sbjct 2313 CTTGATAAACTATTGTCTCACCAACTAGTTAAT 2345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 996298927104