Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq153649 199 6e-49 seq126569 167 4e-39 seq86396 93.3 7e-17 >seq153649 Length=14578 Score = 199 bits (220), Expect = 6e-49 Identities = 195/251 (78%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 13479 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 13538 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 13539 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 13598 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 13599 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 13658 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 13659 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 13718 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 13719 AGTCGACATCG 13729 >seq126569 Length=3621 Score = 167 bits (184), Expect = 4e-39 Identities = 196/262 (75%), Gaps = 5/262 (2%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATC--CCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGG 73 ||||||||| |||||| ||||| | || || ||| ||| || || | | | | || Sbjct 2073 CTTAGATGCTTTCAGCAATTATCTACTTTGCA--CTTGGCTACCTAGTGTTTACCGTGGG 2016 Query 74 CAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTC 133 || | |||| || |||||||||| ||| ||| |||||||| ||||| | | || || Sbjct 2015 CATGATAACTAGTACACCAGAGGTGCATCCTTCCTAGTCCTCTCATACTAGGAAAAGGTC 1956 Query 134 CTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAAC 193 ||||||| || |||||||| |||||| |||| ||||||||| |||||||||||| Sbjct 1955 CTCTCAATACTCTAACGCCCACACCGGATATAGACCAAACTGTCTCATGACGTTCTGAAC 1896 Query 194 CCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCC 253 |||| || | | | |||||||||||||||| ||||||||||| || |||| ||| ||| Sbjct 1895 CCAGTTCACTTACTACTTTAATGGGCGAACAACCCAACCCTTGAAACATACTACAGTCCC 1836 Query 254 AGGATGAGACGAGCCGACATCG 275 ||| | | |||| |||||| Sbjct 1835 AGGTGGTAAAAAGCCAACATCG 1814 >seq86396 Length=535 Score = 93.3 bits (102), Expect = 7e-17 Identities = 73/85 (86%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 193 CCCAGCT-CGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251 ||||||| | ||| || ||||||||||||||||||||||||||||| || |||| ||||| Sbjct 89 CCCAGCTACACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCC 30 Query 252 CCAGGATG-AGACGAGCCGACATCG 275 ||||| | || |||||||||||| Sbjct 29 CCAGGTGGTCGAAGAGCCGACATCG 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 779208201584