Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq120100 158 3e-36 seq170457 145 2e-32 seq171107 136 1e-29 seq139780 114 3e-23 seq170456 86.0 2e-14 seq104209 82.4 2e-13 >seq120100 Length=747 Score = 158 bits (174), Expect = 3e-36 Identities = 142/171 (83%), Gaps = 7/171 (4%) Strand=Plus/Plus Query 31 CACGCGGCATGGCTGCATC-AGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTC 89 |||||||||| ||| | || |||||| ||||||||| | || |||||||||||||||||| Sbjct 126 CACGCGGCATTGCTCCGTCTAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 185 Query 90 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT-GTGGCTGGTC-ATCCTCTCAGACCAG 147 |||||||||||||| |||||||||||| ||||| ||||||| || |||||||| |||||| Sbjct 186 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTCGTGGCTGATCTATCCTCTCGGACCAG 245 Query 148 CTA--GGGATCGTCGCCTAGGTGGGCCATTACC-CCGCCAACTAGCTAATC 195 ||| | ||| || ||| ||| || || || | |||||||||||||| Sbjct 246 CTACGTGCATCATCTCCTTGGT-AGCTATCGCCTCAACCAACTAGCTAATC 295 >seq170457 Length=565 Score = 145 bits (160), Expect = 2e-32 Identities = 228/324 (70%), Gaps = 13/324 (4%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || |||| ||||||||| | | |||| | ||| | ||| ||||||| ||||| || Sbjct 63 TTCACGACCCATAGGCCTTCTACCTCCACGTGACATTGTTGCGCCAGGCTTTCGCCCGTT 122 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||| || |||||||| ||||| ||||||||||||| | ||| |||||||||| | ||||| Sbjct 123 GTGAAAAATTCCCCATTGCTGTCTCCCGTAGGAGTTTAGACTGTGTCTCAGTCCTAGTGT 182 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 || |||| | |||||||| ||| |||| ||| || ||| || ||| || ||| Sbjct 183 GGTCAATCATTTTATCAGACCAACTACTGATCATCGTCTTGGTAAGCTATTGCCTTACCA 242 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||| || || | | || || | ||| | | || | |||| Sbjct 243 ACTAGCTAAAGAGATGTGAGCCCCTC--ATCG-----GGC----GGATTCCTCATTTTGC 291 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||| ||| | ||||||| |||| Sbjct 292 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 349 Query 305 GTTTCCCAGACATTACTCACCCGT 328 | ||| | ||||||| |||||| Sbjct 350 GGTTCTTACGCATTACTGACCCGT 373 >seq171107 Length=3864 Score = 136 bits (150), Expect = 1e-29 Identities = 135/175 (77%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 |||||| | | || | | || ||| |||||||||| | |||||||| || |||||||| Sbjct 1543 CCTTCTACCTCCATGTAGAATTGCTCCATCAGGCTTTCTCCCATTGTAGAAAATTCCCCA 1484 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 || |||||| ||| |||| ||| |||||||||||| | ||||||||| |||| |||| Sbjct 1483 CTATTGCCTCTTGTAAGAGTTTGGGCCGTGTCTCAGTCCTAGTGTGGCTAATCATTCTCT 1424 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 | ||||||||| ||| || ||| ||| | |||||| ||||||||| |||| Sbjct 1423 CGGACCAGCTATTGATTATCACCTTGGTAAACTATTACCTCGCCAACTAATTAAT 1369 >seq139780 Length=6461 Score = 114 bits (126), Expect = 3e-23 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 ||||| || ||||||| ||| |||||| ||| |||| ||| |||||||||||| | | Sbjct 5042 CATTGCAGAAAATTCCCCCCTGTTGCCTCTTGTAAGAGTTTGGGCCGTGTCTCAGTCCTA 5101 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180 |||||||| |||||||||| ||||||||| ||| || ||| ||| | |||||| | Sbjct 5102 GTGTGGCTAATCATCCTCTCGGACCAGCTACTGATTATCACCTTGGTAAACTATTACCTC 5161 Query 181 GCCAACTAGCTAA 193 |||||||| |||| Sbjct 5162 GCCAACTAACTAA 5174 >seq170456 Length=1356 Score = 86.0 bits (94), Expect = 2e-14 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || ||||||| ||| |||| | | |||| ||| ||| ||||| ||| ||| || Sbjct 921 TTCACAACCCACGGGCTTTCTACCTCTGCGCGACATTGCTCTATCAGACTTTTGCCAGTT 980 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||| |||| | |||||||||||| | ||| |||||||||| | ||||| Sbjct 981 GCGAAAAATTCCCCATTGCTACTTCCCGTAGGAGTTTAGACTGTGTCTCAGTCCTAGTGT 1040 Query 125 GG 126 || Sbjct 1041 GG 1042 >seq104209 Length=6530 Score = 82.4 bits (90), Expect = 2e-13 Identities = 85/110 (77%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137 || |||| |||| ||||||||||||| |||||| |||| || ||||| || ||||||| Sbjct 2690 CATTGCTACCTCT-GTAGGAGTCTGGATTGTGTCTTAGTTTCAATGTGGTTGATCATCCT 2632 Query 138 CTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACT 187 || |||||| || |||| ||| || | | | ||||||| | |||||| Sbjct 2631 CTTAGACCACTTAATGATCATCGTCTTGATAAGTCATTACCTCACCAACT 2582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1219827532544