Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1
_202015-09-10] 210,444 sequences; 539,624,286 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq120100 158 3e-36
seq170457 145 2e-32
seq171107 136 1e-29
seq139780 114 3e-23
seq170456 86.0 2e-14
seq104209 82.4 2e-13
>seq120100
Length=747
Score = 158 bits (174), Expect = 3e-36
Identities = 142/171 (83%), Gaps = 7/171 (4%)
Strand=Plus/Plus
Query 31 CACGCGGCATGGCTGCATC-AGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTC 89
|||||||||| ||| | || |||||| ||||||||| | || ||||||||||||||||||
Sbjct 126 CACGCGGCATTGCTCCGTCTAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 185
Query 90 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT-GTGGCTGGTC-ATCCTCTCAGACCAG 147
|||||||||||||| |||||||||||| ||||| ||||||| || |||||||| ||||||
Sbjct 186 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTCGTGGCTGATCTATCCTCTCGGACCAG 245
Query 148 CTA--GGGATCGTCGCCTAGGTGGGCCATTACC-CCGCCAACTAGCTAATC 195
||| | ||| || ||| ||| || || || | ||||||||||||||
Sbjct 246 CTACGTGCATCATCTCCTTGGT-AGCTATCGCCTCAACCAACTAGCTAATC 295
>seq170457
Length=565
Score = 145 bits (160), Expect = 2e-32
Identities = 228/324 (70%), Gaps = 13/324 (4%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || |||| ||||||||| | | |||| | ||| | ||| ||||||| ||||| ||
Sbjct 63 TTCACGACCCATAGGCCTTCTACCTCCACGTGACATTGTTGCGCCAGGCTTTCGCCCGTT 122
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
||| || |||||||| ||||| ||||||||||||| | ||| |||||||||| | |||||
Sbjct 123 GTGAAAAATTCCCCATTGCTGTCTCCCGTAGGAGTTTAGACTGTGTCTCAGTCCTAGTGT 182
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
|| |||| | |||||||| ||| |||| ||| || ||| || ||| || |||
Sbjct 183 GGTCAATCATTTTATCAGACCAACTACTGATCATCGTCTTGGTAAGCTATTGCCTTACCA 242
Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244
||||||||| || || | | || || | ||| | | || | ||||
Sbjct 243 ACTAGCTAAAGAGATGTGAGCCCCTC--ATCG-----GGC----GGATTCCTCATTTTGC 291
Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304
|| | | | || | ||||||||| |||||||||| ||| | ||||||| ||||
Sbjct 292 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 349
Query 305 GTTTCCCAGACATTACTCACCCGT 328
| ||| | ||||||| ||||||
Sbjct 350 GGTTCTTACGCATTACTGACCCGT 373
>seq171107
Length=3864
Score = 136 bits (150), Expect = 1e-29
Identities = 135/175 (77%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79
|||||| | | || | | || ||| |||||||||| | |||||||| || ||||||||
Sbjct 1543 CCTTCTACCTCCATGTAGAATTGCTCCATCAGGCTTTCTCCCATTGTAGAAAATTCCCCA 1484
Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139
|| |||||| ||| |||| ||| |||||||||||| | ||||||||| |||| ||||
Sbjct 1483 CTATTGCCTCTTGTAAGAGTTTGGGCCGTGTCTCAGTCCTAGTGTGGCTAATCATTCTCT 1424
Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194
| ||||||||| ||| || ||| ||| | |||||| ||||||||| ||||
Sbjct 1423 CGGACCAGCTATTGATTATCACCTTGGTAAACTATTACCTCGCCAACTAATTAAT 1369
>seq139780
Length=6461
Score = 114 bits (126), Expect = 3e-23
Identities = 105/133 (79%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120
||||| || ||||||| ||| |||||| ||| |||| ||| |||||||||||| | |
Sbjct 5042 CATTGCAGAAAATTCCCCCCTGTTGCCTCTTGTAAGAGTTTGGGCCGTGTCTCAGTCCTA 5101
Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180
|||||||| |||||||||| ||||||||| ||| || ||| ||| | |||||| |
Sbjct 5102 GTGTGGCTAATCATCCTCTCGGACCAGCTACTGATTATCACCTTGGTAAACTATTACCTC 5161
Query 181 GCCAACTAGCTAA 193
|||||||| ||||
Sbjct 5162 GCCAACTAACTAA 5174
>seq170456
Length=1356
Score = 86.0 bits (94), Expect = 2e-14
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| ||||||| ||| |||| | | |||| ||| ||| ||||| ||| ||| ||
Sbjct 921 TTCACAACCCACGGGCTTTCTACCTCTGCGCGACATTGCTCTATCAGACTTTTGCCAGTT 980
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||||||| |||| | |||||||||||| | ||| |||||||||| | |||||
Sbjct 981 GCGAAAAATTCCCCATTGCTACTTCCCGTAGGAGTTTAGACTGTGTCTCAGTCCTAGTGT 1040
Query 125 GG 126
||
Sbjct 1041 GG 1042
>seq104209
Length=6530
Score = 82.4 bits (90), Expect = 2e-13
Identities = 85/110 (77%), Gaps = 1/110 (1%)
Strand=Plus/Minus
Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137
|| |||| |||| ||||||||||||| |||||| |||| || ||||| || |||||||
Sbjct 2690 CATTGCTACCTCT-GTAGGAGTCTGGATTGTGTCTTAGTTTCAATGTGGTTGATCATCCT 2632
Query 138 CTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACT 187
|| |||||| || |||| ||| || | | | ||||||| | ||||||
Sbjct 2631 CTTAGACCACTTAATGATCATCGTCTTGATAAGTCATTACCTCACCAACT 2582
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1219827532544
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |