Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1
_202015-09-10] 210,444 sequences; 539,624,286 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq170457 161 3e-37
seq120100 150 5e-34
seq171107 131 5e-28
seq170456 122 3e-25
seq139780 109 2e-21
seq165872 98.7 3e-18
seq164662 86.0 2e-14
seq134173 86.0 2e-14
seq140733 77.0 1e-11
>seq170457
Length=565
Score = 161 bits (178), Expect = 3e-37
Identities = 185/246 (75%), Gaps = 2/246 (1%)
Strand=Plus/Minus
Query 169 TTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGG 228
||||||||||||||||| || |||||||||| ||| ||||||||| | |||| |
Sbjct 251 TTAGCTAGTTGGTAAGGCAATAGCTTACCAAGACGATGATCAGTAGTTGGTCTGATAAAA 192
Query 229 TGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGA 288
|||| | ||||| | | |||||||||| ||| ||||||||||||||| ||||| ||||||
Sbjct 191 TGATTGACCACACTAGGACTGAGACACAGTCTAAACTCCTACGGGAGACAGCAATGGGGA 132
Query 289 ATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCG 348
|| || ||||| |||| |||||||| ||| ||| | | |||| | |||||||| |
Sbjct 131 ATTTTTCACAACGGGCGAAAGCCTGGCGCAACAATGTCACGTGGAGGTAGAAGGCCTATG 72
Query 349 GGTCGTAAAGCTCT-GTCCTCAAGGA-AGATAATGACGGTACTTGAGGAGGAAGCCCCGG 406
|||||| || | | |||| || | | | |||||| ||| || ||| || | ||
Sbjct 71 GGTCGTGAACTTTTCTTCCTGGAGAATAAACAATGACAGTATATGGGGAATAAACATCGA 12
Query 407 CTAACT 412
||||||
Sbjct 11 CTAACT 6
>seq120100
Length=747
Score = 150 bits (166), Expect = 5e-34
Identities = 144/175 (82%), Gaps = 7/175 (4%)
Strand=Plus/Minus
Query 163 GTCTGATTAGCTAGTTGGTA-AGGTAACGGCTTACCAAGGCGACGAT-CA-GTAGCCGAC 219
||||||||||||||||||| ||| | ||| ||||||| || ||| || ||||| |
Sbjct 299 GTCTGATTAGCTAGTTGGTTGAGGCGATAGCT-ACCAAGGAGATGATGCACGTAGCTGGT 241
Query 220 CTGAGAGGGT-GATCGGCCAC-ATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277
| |||||| | |||| ||||| | ||| |||||||||||| ||| |||||||||||||||
Sbjct 240 CCGAGAGGATAGATCAGCCACGACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGC 181
Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCT-GATGCAGCAACGCCGCGTG 331
||||||||||||| || | |||||||| ||||||| || | ||||| ||||||||
Sbjct 180 AGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTAGACGGAGCAATGCCGCGTG 126
>seq171107
Length=3864
Score = 131 bits (144), Expect = 5e-28
Identities = 125/160 (78%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222
|||| |||| ||||||| |||||| | ||||||||| || |||| |||| | | |
Sbjct 1364 GTCTTATTAATTAGTTGGCGAGGTAATAGTTTACCAAGGTGATAATCAATAGCTGGTCCG 1423
Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282
|||| |||| |||||| | | |||||||||||| |||||||| ||| |||||| ||
Sbjct 1424 AGAGAATGATTAGCCACACTAGGACTGAGACACGGCCCAAACTCTTACAAGAGGCAATAG 1483
Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322
|||||||| || |||||||| ||||||||||| |||||
Sbjct 1484 TGGGGAATTTTCTACAATGGGAGAAAGCCTGATGGAGCAA 1523
>seq170456
Length=1356
Score = 122 bits (134), Expect = 3e-25
Identities = 190/267 (71%), Gaps = 5/267 (2%)
Strand=Plus/Minus
Query 236 CCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGC 295
||||| | | |||||||||| ||| |||||||||||||| | |||| |||||||| || |
Sbjct 1042 CCACACTAGGACTGAGACACAGTCTAAACTCCTACGGGAAGTAGCAATGGGGAATTTTTC 983
Query 296 ACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG-TGAGCGATGAAGGCCTTCGGGTCGT 354
||| |||||||| ||||| ||||| | |||| ||| | ||| ||| |||| ||
Sbjct 982 GCAACTGGCAAAAGTCTGATAGAGCAATGTCGCGCAGAG-GTAGAAAGCCCGTGGGTTGT 924
Query 355 AAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACT 412
|| ||| | | || ||| | |||||| || || ||| || | || ||||||
Sbjct 923 GAACTTCTTTTCCCAGAGAAAAAGCAATGACAATATCTGGGGAATAAACATCGACTAACT 864
Query 413 ACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGT 472
|| ||| |||| ||||||| ||| || |||||||| | ||| | | ||| ||
Sbjct 863 CTATGTCAGAAGCCATGGTAATATAGAGGATGCAAGCGTTATTTGAAATGA-TTGGGTGT 805
Query 473 AAAGGGTGCGTAGGTGGTTTCTTAAGT 499
|||| | |||||||||| ||||||
Sbjct 804 AAAGCATCTATAGGTGGTTTTTTAAGT 778
>seq139780
Length=6461
Score = 109 bits (120), Expect = 2e-21
Identities = 104/133 (78%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 169 TTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGG 228
|||| ||||||| |||||| | ||||||||| || ||||||||| | | ||||||
Sbjct 5174 TTAGTTAGTTGGCGAGGTAATAGTTTACCAAGGTGATAATCAGTAGCTGGTCCGAGAGGA 5115
Query 229 TGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGA 288
|||| |||||| | | |||||||||||| |||||||| ||| |||||| ||| |||||
Sbjct 5114 TGATTAGCCACACTAGGACTGAGACACGGCCCAAACTCTTACAAGAGGCAACAGGGGGGA 5055
Query 289 ATATTGCACAATG 301
|| || |||||
Sbjct 5054 ATTTTCTGCAATG 5042
>seq165872
Length=7112
Score = 98.7 bits (108), Expect = 3e-18
Identities = 117/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223
||| |||||||||||||| || || | ||| |||||| | | | |||| | | |||
Sbjct 3779 TCTAATTAGCTAGTTGGTGAGACAATAGTTTATCAAGGCAATGGTTAGTACCGGGTGTGA 3720
Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283
|||| |||| ||||||| ||| | || | | ||||||||| ||||| || || |
Sbjct 3719 GAGGATGATAAACCACATTAAGACTAAAGCAATGCCTAAACTCCTATGGGAGACAACAAT 3660
Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322
||| ||| || | ||||||| |||||||| ||| |||||
Sbjct 3659 GGGAAATTTTCCGCAATGGGTAAAAGCCTAATGGAGCAA 3621
>seq164662
Length=1432
Score = 86.0 bits (94), Expect = 2e-14
Identities = 166/240 (69%), Gaps = 5/240 (2%)
Strand=Plus/Minus
Query 264 CTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAAC 323
|| |||||| ||||||||||||||||| || ||||| |||||||||||| | |||||
Sbjct 1115 CTTCTACGGAAGGCAGCAGTGGGGAATTTTCTGCAATGTGCAAAAGCCTGACGGAGCAAT 1056
Query 324 GCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTG-TCCTCAAGGAAGA--TAAT 380
| | ||| | ||||| | | | || || || || | ||| ||||| |||
Sbjct 1055 GTCATGTGGAGGTAGAAGGTCCACAAGCTGTGAA-CTGTGTTTCTCGGAGAAGAAGCAAT 997
Query 381 GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAG 440
||| || | ||| |||| | || |||| |||||| ||| | |||||||| ||
Sbjct 996 GACCATAGCTAGGGAATAAGCATCAGCCAACTCTGTGCCAACAGTCATGGTAATACAGAG 937
Query 441 GGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
| | |||||||| ||||| || | | |||| ||| | |||||| || |||||||
Sbjct 936 GATGTAAGCGTTATTCGGAA-TAATTGAGCGTCAAGCATCTATAGGTGACTTTTTAAGTC 878
>seq134173
Length=6119
Score = 86.0 bits (94), Expect = 2e-14
Identities = 92/121 (76%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 163 GTCTGATTAGCTAGTTGGTAAGGTAAC--GGCTTACCAAGGCGACGATCAGTAGCCGACC 220
||||||||||||| ||||| ||| || ||||||||||| || | ||| || || |
Sbjct 5661 GTCTGATTAGCTACTTGGTGAGGCAATATGGCTTACCAAGATGATGGTCAATATGTGATC 5720
Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280
| |||| ||||| |||| |||| |||||||||| | | ||||||||||||| || |
Sbjct 5721 TCAGAGAATGATCAACCACCTTGGGACTGAGACACTACCTAGACTCCTACGGGAGACAAC 5780
Query 281 A 281
|
Sbjct 5781 A 5781
>seq140733
Length=6076
Score = 77.0 bits (84), Expect = 1e-11
Identities = 90/121 (74%), Gaps = 2/121 (2%)
Strand=Plus/Minus
Query 163 GTCTGATTAGCTAGTTGGTAAGGTAAC--GGCTTACCAAGGCGACGATCAGTAGCCGACC 220
|| |||||||||| ||||| ||| || ||||||||||| || | ||| || || |
Sbjct 458 GTTTGATTAGCTACTTGGTGAGGCAATATGGCTTACCAAGATGATGGTCAATATGTGATC 399
Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280
| | || ||||| |||| |||| |||||||||| | | ||||||||||||| || |
Sbjct 398 TAATAGAATGATCAACCACCTTGGGACTGAGACACTACCTAGACTCCTACGGGAGACAAC 339
Query 281 A 281
|
Sbjct 338 A 338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1494448390656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |