Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq170457 161 3e-37 seq120100 150 5e-34 seq171107 131 5e-28 seq170456 122 3e-25 seq139780 109 2e-21 seq165872 98.7 3e-18 seq164662 86.0 2e-14 seq134173 86.0 2e-14 seq140733 77.0 1e-11 >seq170457 Length=565 Score = 161 bits (178), Expect = 3e-37 Identities = 185/246 (75%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 169 TTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGG 228 ||||||||||||||||| || |||||||||| ||| ||||||||| | |||| | Sbjct 251 TTAGCTAGTTGGTAAGGCAATAGCTTACCAAGACGATGATCAGTAGTTGGTCTGATAAAA 192 Query 229 TGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGA 288 |||| | ||||| | | |||||||||| ||| ||||||||||||||| ||||| |||||| Sbjct 191 TGATTGACCACACTAGGACTGAGACACAGTCTAAACTCCTACGGGAGACAGCAATGGGGA 132 Query 289 ATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCG 348 || || ||||| |||| |||||||| ||| ||| | | |||| | |||||||| | Sbjct 131 ATTTTTCACAACGGGCGAAAGCCTGGCGCAACAATGTCACGTGGAGGTAGAAGGCCTATG 72 Query 349 GGTCGTAAAGCTCT-GTCCTCAAGGA-AGATAATGACGGTACTTGAGGAGGAAGCCCCGG 406 |||||| || | | |||| || | | | |||||| ||| || ||| || | || Sbjct 71 GGTCGTGAACTTTTCTTCCTGGAGAATAAACAATGACAGTATATGGGGAATAAACATCGA 12 Query 407 CTAACT 412 |||||| Sbjct 11 CTAACT 6 >seq120100 Length=747 Score = 150 bits (166), Expect = 5e-34 Identities = 144/175 (82%), Gaps = 7/175 (4%) Strand=Plus/Minus Query 163 GTCTGATTAGCTAGTTGGTA-AGGTAACGGCTTACCAAGGCGACGAT-CA-GTAGCCGAC 219 ||||||||||||||||||| ||| | ||| ||||||| || ||| || ||||| | Sbjct 299 GTCTGATTAGCTAGTTGGTTGAGGCGATAGCT-ACCAAGGAGATGATGCACGTAGCTGGT 241 Query 220 CTGAGAGGGT-GATCGGCCAC-ATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277 | |||||| | |||| ||||| | ||| |||||||||||| ||| ||||||||||||||| Sbjct 240 CCGAGAGGATAGATCAGCCACGACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGC 181 Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCT-GATGCAGCAACGCCGCGTG 331 ||||||||||||| || | |||||||| ||||||| || | ||||| |||||||| Sbjct 180 AGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTAGACGGAGCAATGCCGCGTG 126 >seq171107 Length=3864 Score = 131 bits (144), Expect = 5e-28 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 |||| |||| ||||||| |||||| | ||||||||| || |||| |||| | | | Sbjct 1364 GTCTTATTAATTAGTTGGCGAGGTAATAGTTTACCAAGGTGATAATCAATAGCTGGTCCG 1423 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 |||| |||| |||||| | | |||||||||||| |||||||| ||| |||||| || Sbjct 1424 AGAGAATGATTAGCCACACTAGGACTGAGACACGGCCCAAACTCTTACAAGAGGCAATAG 1483 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322 |||||||| || |||||||| ||||||||||| ||||| Sbjct 1484 TGGGGAATTTTCTACAATGGGAGAAAGCCTGATGGAGCAA 1523 >seq170456 Length=1356 Score = 122 bits (134), Expect = 3e-25 Identities = 190/267 (71%), Gaps = 5/267 (2%) Strand=Plus/Minus Query 236 CCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGC 295 ||||| | | |||||||||| ||| |||||||||||||| | |||| |||||||| || | Sbjct 1042 CCACACTAGGACTGAGACACAGTCTAAACTCCTACGGGAAGTAGCAATGGGGAATTTTTC 983 Query 296 ACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG-TGAGCGATGAAGGCCTTCGGGTCGT 354 ||| |||||||| ||||| ||||| | |||| ||| | ||| ||| |||| || Sbjct 982 GCAACTGGCAAAAGTCTGATAGAGCAATGTCGCGCAGAG-GTAGAAAGCCCGTGGGTTGT 924 Query 355 AAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACT 412 || ||| | | || ||| | |||||| || || ||| || | || |||||| Sbjct 923 GAACTTCTTTTCCCAGAGAAAAAGCAATGACAATATCTGGGGAATAAACATCGACTAACT 864 Query 413 ACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGT 472 || ||| |||| ||||||| ||| || |||||||| | ||| | | ||| || Sbjct 863 CTATGTCAGAAGCCATGGTAATATAGAGGATGCAAGCGTTATTTGAAATGA-TTGGGTGT 805 Query 473 AAAGGGTGCGTAGGTGGTTTCTTAAGT 499 |||| | |||||||||| |||||| Sbjct 804 AAAGCATCTATAGGTGGTTTTTTAAGT 778 >seq139780 Length=6461 Score = 109 bits (120), Expect = 2e-21 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 169 TTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGG 228 |||| ||||||| |||||| | ||||||||| || ||||||||| | | |||||| Sbjct 5174 TTAGTTAGTTGGCGAGGTAATAGTTTACCAAGGTGATAATCAGTAGCTGGTCCGAGAGGA 5115 Query 229 TGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGA 288 |||| |||||| | | |||||||||||| |||||||| ||| |||||| ||| ||||| Sbjct 5114 TGATTAGCCACACTAGGACTGAGACACGGCCCAAACTCTTACAAGAGGCAACAGGGGGGA 5055 Query 289 ATATTGCACAATG 301 || || ||||| Sbjct 5054 ATTTTCTGCAATG 5042 >seq165872 Length=7112 Score = 98.7 bits (108), Expect = 3e-18 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 ||| |||||||||||||| || || | ||| |||||| | | | |||| | | ||| Sbjct 3779 TCTAATTAGCTAGTTGGTGAGACAATAGTTTATCAAGGCAATGGTTAGTACCGGGTGTGA 3720 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| |||| ||||||| ||| | || | | ||||||||| ||||| || || | Sbjct 3719 GAGGATGATAAACCACATTAAGACTAAAGCAATGCCTAAACTCCTATGGGAGACAACAAT 3660 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322 ||| ||| || | ||||||| |||||||| ||| ||||| Sbjct 3659 GGGAAATTTTCCGCAATGGGTAAAAGCCTAATGGAGCAA 3621 >seq164662 Length=1432 Score = 86.0 bits (94), Expect = 2e-14 Identities = 166/240 (69%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 264 CTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAAC 323 || |||||| ||||||||||||||||| || ||||| |||||||||||| | ||||| Sbjct 1115 CTTCTACGGAAGGCAGCAGTGGGGAATTTTCTGCAATGTGCAAAAGCCTGACGGAGCAAT 1056 Query 324 GCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTG-TCCTCAAGGAAGA--TAAT 380 | | ||| | ||||| | | | || || || || | ||| ||||| ||| Sbjct 1055 GTCATGTGGAGGTAGAAGGTCCACAAGCTGTGAA-CTGTGTTTCTCGGAGAAGAAGCAAT 997 Query 381 GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAG 440 ||| || | ||| |||| | || |||| |||||| ||| | |||||||| || Sbjct 996 GACCATAGCTAGGGAATAAGCATCAGCCAACTCTGTGCCAACAGTCATGGTAATACAGAG 937 Query 441 GGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | | |||||||| ||||| || | | |||| ||| | |||||| || ||||||| Sbjct 936 GATGTAAGCGTTATTCGGAA-TAATTGAGCGTCAAGCATCTATAGGTGACTTTTTAAGTC 878 >seq134173 Length=6119 Score = 86.0 bits (94), Expect = 2e-14 Identities = 92/121 (76%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAAC--GGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||||||||||||| ||||| ||| || ||||||||||| || | ||| || || | Sbjct 5661 GTCTGATTAGCTACTTGGTGAGGCAATATGGCTTACCAAGATGATGGTCAATATGTGATC 5720 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 | |||| ||||| |||| |||| |||||||||| | | ||||||||||||| || | Sbjct 5721 TCAGAGAATGATCAACCACCTTGGGACTGAGACACTACCTAGACTCCTACGGGAGACAAC 5780 Query 281 A 281 | Sbjct 5781 A 5781 >seq140733 Length=6076 Score = 77.0 bits (84), Expect = 1e-11 Identities = 90/121 (74%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAAC--GGCTTACCAAGGCGACGATCAGTAGCCGACC 220 || |||||||||| ||||| ||| || ||||||||||| || | ||| || || | Sbjct 458 GTTTGATTAGCTACTTGGTGAGGCAATATGGCTTACCAAGATGATGGTCAATATGTGATC 399 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 | | || ||||| |||| |||| |||||||||| | | ||||||||||||| || | Sbjct 398 TAATAGAATGATCAACCACCTTGGGACTGAGACACTACCTAGACTCCTACGGGAGACAAC 339 Query 281 A 281 | Sbjct 338 A 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1494448390656