Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq170456 116 9e-24 seq173905 77.0 8e-12 >seq170456 Length=1356 Score = 116 bits (128), Expect = 9e-24 Identities = 224/328 (68%), Gaps = 2/328 (1%) Strand=Plus/Minus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 || |||||| || ||| |||| ||||||| ||| || |||||||| | ||| | Sbjct 872 CGACTAACTCTATGTCAGAAGCCATGGTAATATAGAGGATGCAAGCGTTATTTGAAATGA 813 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 |||| |||||| | |||||||||| |||||| | ||| | | |||| ||| Sbjct 812 TTGGGTGTAAAGCATCTATAGGTGGTTTTTTAAGTTCTCTATCAAATCCCAAGGCTTAAC 753 Query 139 CCCGGGACTGCTTTTG-AAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTA 197 || || || | | || |||| | | | |||| | | ||||||| |||||| Sbjct 752 CCTGG-ACAGGTGGTGGAAACCACCAAGTTGGAGTACGGTAGGGGCATAGGGAATTTTCG 694 Query 198 GTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGG 257 ||| || | |||||| |||||| || | | |||||||| | |||| || ||| ||| Sbjct 693 GTGGAGTGATGAAATTCGTAGAGATCGGAAAGAACACCAACGACGAAAGCACTTTGGTGG 634 Query 258 ACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTA 317 ||| | | |||| | ||||| |||||| ||| | ||||||||||| ||| Sbjct 633 GTCAACACTAAAATTGAGAGACAAAAGCTAGGGGAGAAAATGGAATTAGATACCCAAGTA 574 Query 318 GTCCACGCCGTAAACGATGAATACTAGG 345 |||| |||||||||||| |||||||| Sbjct 573 GTCCTAACCGTAAACGATGGATACTAGG 546 >seq173905 Length=13154 Score = 77.0 bits (84), Expect = 8e-12 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 ||||||||| || ||||||| || |||| || |||||||||||||| |||||| Sbjct 12538 ACTGACACTAAGAGACGAAAGCTAGGAGAGCGAATGGGATTAGATACCCTAATAGTCCTA 12597 Query 324 GCCGTAAACGATGAATACTAGG 345 |||||||||||| |||||||| Sbjct 12598 TCCGTAAACGATGCATACTAGG 12619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200667937792