Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1
_202015-09-10] 210,444 sequences; 539,624,286 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq170456 116 9e-24
seq173905 77.0 8e-12
>seq170456
Length=1356
Score = 116 bits (128), Expect = 9e-24
Identities = 224/328 (68%), Gaps = 2/328 (1%)
Strand=Plus/Minus
Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78
|| |||||| || ||| |||| ||||||| ||| || |||||||| | ||| |
Sbjct 872 CGACTAACTCTATGTCAGAAGCCATGGTAATATAGAGGATGCAAGCGTTATTTGAAATGA 813
Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138
|||| |||||| | |||||||||| |||||| | ||| | | |||| |||
Sbjct 812 TTGGGTGTAAAGCATCTATAGGTGGTTTTTTAAGTTCTCTATCAAATCCCAAGGCTTAAC 753
Query 139 CCCGGGACTGCTTTTG-AAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTA 197
|| || || | | || |||| | | | |||| | | ||||||| ||||||
Sbjct 752 CCTGG-ACAGGTGGTGGAAACCACCAAGTTGGAGTACGGTAGGGGCATAGGGAATTTTCG 694
Query 198 GTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGG 257
||| || | |||||| |||||| || | | |||||||| | |||| || ||| |||
Sbjct 693 GTGGAGTGATGAAATTCGTAGAGATCGGAAAGAACACCAACGACGAAAGCACTTTGGTGG 634
Query 258 ACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTA 317
||| | | |||| | ||||| |||||| ||| | ||||||||||| |||
Sbjct 633 GTCAACACTAAAATTGAGAGACAAAAGCTAGGGGAGAAAATGGAATTAGATACCCAAGTA 574
Query 318 GTCCACGCCGTAAACGATGAATACTAGG 345
|||| |||||||||||| ||||||||
Sbjct 573 GTCCTAACCGTAAACGATGGATACTAGG 546
>seq173905
Length=13154
Score = 77.0 bits (84), Expect = 8e-12
Identities = 66/82 (80%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323
||||||||| || ||||||| || |||| || |||||||||||||| ||||||
Sbjct 12538 ACTGACACTAAGAGACGAAAGCTAGGAGAGCGAATGGGATTAGATACCCTAATAGTCCTA 12597
Query 324 GCCGTAAACGATGAATACTAGG 345
|||||||||||| ||||||||
Sbjct 12598 TCCGTAAACGATGCATACTAGG 12619
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1200667937792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |