Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1
_202015-09-10] 210,444 sequences; 539,624,286 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq35909 138 2e-30
seq154158 102 2e-19
seq128807 93.3 8e-17
seq18495 93.3 8e-17
seq36891 91.5 3e-16
seq166568 89.7 1e-15
seq162762 77.0 6e-12
seq9698 77.0 6e-12
seq35604 75.2 2e-11
seq46366 73.4 7e-11
>seq35909
Length=842
Score = 138 bits (152), Expect = 2e-30
Identities = 107/126 (85%), Gaps = 1/126 (1%)
Strand=Plus/Plus
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||||||||| ||| || ||||||||| | ||| | ||||| |||||||||| |||||
Sbjct 7 CCTTGGCCGATAGGCCTAGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTG 65
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||| ||| ||||||||||||||| ||||||||||||| ||||||| | |||||||| |
Sbjct 66 CAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAACTCGCGTTGACT 125
Query 311 ACGTCC 316
||||||
Sbjct 126 ACGTCC 131
>seq154158
Length=1230
Score = 102 bits (112), Expect = 2e-19
Identities = 114/149 (77%), Gaps = 4/149 (3%)
Strand=Plus/Plus
Query 71 GCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128
||||||||||||||| || ||| | ||| | |||||||||||| |||| |||| ||
Sbjct 987 GCTTCTTAGAGGGACCATGATCGCTTAGGCCAA-GGAAGTTTGAGGTGATAATAGGTATG 1045
Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188
||||||| ||||||||| | || | || | | | |||||| | | |||||||| ||
Sbjct 1046 TGATGCCTTTAGATGTTTTAGG-CACATGTGTGTTACACTAATGTATTCAACGAGTCTAT 1104
Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTT 217
||||| ||| ||||||||||||||||
Sbjct 1105 AACCTTAACCGACAGGTCTGGGTAATCTT 1133
>seq128807
Length=4782
Score = 93.3 bits (102), Expect = 8e-17
Identities = 112/149 (75%), Gaps = 4/149 (3%)
Strand=Plus/Minus
Query 71 GCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128
||||||||||||||| || ||| | ||| | |||||||||||| |||| |||| ||
Sbjct 3762 GCTTCTTAGAGGGACCATGATCGCTTAGGCCAA-GGAAGTTTGAGGTGATAATAGGTTTG 3704
Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188
||||||| ||||||||| | || | || | | | |||||| | | |||||||| ||
Sbjct 3703 TGATGCCTTTAGATGTTTTAGG-CACATGTGTGTTACACTAATGTATTCAACGAGTCTAT 3645
Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTT 217
|||||| || ||||| |||||||||
Sbjct 3644 AACCTTGATCGACAGGTCCAGGTAATCTT 3616
>seq18495
Length=3373
Score = 93.3 bits (102), Expect = 8e-17
Identities = 112/149 (75%), Gaps = 4/149 (3%)
Strand=Plus/Minus
Query 71 GCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128
||||||||||||||| || | ||| | ||| | |||||||||||| |||| | ||||
Sbjct 3305 GCTTCTTAGAGGGACCATGGTCGCTTAGGCC-AGGGAAGTTTGAGGTGATAATATGTCTA 3247
Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188
||||||||||||||||| | || | || | ||| |||| | | | ||| |||| ||
Sbjct 3246 TGATGCCCTTAGATGTTTTAGG-CACATGTGCGTTACATTAATGTATTCAATGAGTCTAT 3188
Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTT 217
|||||| | ||||| ||||||||||
Sbjct 3187 AACCTTGATTGATAGGTCCGGGTAATCTT 3159
>seq36891
Length=1840
Score = 91.5 bits (100), Expect = 3e-16
Identities = 70/83 (84%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
|||||||||| ||| ||||||| || |||| |||| |||| ||| ||||| ||| ||||
Sbjct 1649 CATTGCAATTGTTGGTCTTCAATGATGAATTCCTAATAAGTGCGAGTCATTAGCTTGCGT 1708
Query 306 TGATTACGTCCCTGCCCTTTGTA 328
||| ||| |||||||||||||||
Sbjct 1709 TGACTACATCCCTGCCCTTTGTA 1731
>seq166568
Length=1131
Score = 89.7 bits (98), Expect = 1e-15
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316
||| |||||||||| |||| |||| |||||||| ||||||||| ||||||| ||| |||
Sbjct 951 TTGGTCTTCAACGATGAATTCCTAATAAGCGCGAGTCATCAGCTTGCGTTGACTACATCC 1010
Query 317 CTGCCCTTTGTA 328
||||||||||||
Sbjct 1011 CTGCCCTTTGTA 1022
>seq162762
Length=1399
Score = 77.0 bits (84), Expect = 6e-12
Identities = 81/104 (78%), Gaps = 6/104 (6%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCG-GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
||||||||||||| ||| | | | || ||| ||||||||||||||| ||||| ||||
Sbjct 789 CTTCTTAGAGGGAATATGGTGGTTTAGGA-ATGAAAGTTTGAGGCAATATCAGGTTTGTG 731
Query 131 AT----GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170
|| || ||| ||||||||| |||||| || |||||| |||
Sbjct 730 ATACAAACCTTTACATGTTCTGGACCGCACACGTGCTACAGTGA 687
>seq9698
Length=8182
Score = 77.0 bits (84), Expect = 6e-12
Identities = 169/260 (65%), Gaps = 34/260 (13%)
Strand=Plus/Plus
Query 71 GCTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128
|||||||||||||||||| | | | || || || | |||||||||||||||||||
Sbjct 2882 GCTTCTTAGAGGGACTAT-GACAGTTTAGGTGAAGGCAATTTGAGGCAATAACAGGTCCA 2940
Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188
| |||| |||||||||| ||| ||| | | | |||| ||| | |||||||| ||
Sbjct 2941 TAATGCTCTTAGATGTTTTGGATTGCATGTGTGTTACATTGATGTATTCAACGAGTCTAT 3000
Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248
||||| | | | | ||||||| |
Sbjct 3001 AGTCTTGGTTGACAAGCCAAAGTAATCT-------------------------------T 3029
Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308
||||||| ||| |||||||| |||||| ||||||| | | | ||||||| ||||||
Sbjct 3030 TGCAATTGTTGGTCTTCAACAAGGAATTCCTAGTATACATGAGCCATCAGCTTACGTTGA 3089
Query 309 TTACGTCCCTGCCCTTTGTA 328
||||||| | || ||||||
Sbjct 3090 CTACGTCCTTTCCTTTTGTA 3109
>seq35604
Length=6738
Score = 75.2 bits (82), Expect = 2e-11
Identities = 78/101 (77%), Gaps = 1/101 (1%)
Strand=Plus/Plus
Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||||||||||||| | || ||| |||| ||||||||||||| |||||| |
Sbjct 2945 GCTTCTTAGAGGGACTATGATAGTTTAGGCGAAGGAAATTTGAGGCAATAATAGGTCTAT 3004
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170
|||| |||||||||| ||| ||| | | | |||| |||
Sbjct 3005 AATGCTCTTAGATGTTTTGGATTGCATGTGTGTTACATTGA 3045
>seq46366
Length=1809
Score = 73.4 bits (80), Expect = 7e-11
Identities = 78/101 (77%), Gaps = 9/101 (9%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||| |||||||| | | ||||| ||| ||||||||||||||| || ||
Sbjct 1194 CTTCTTAGGGGGACTATGGTGGTTCAAGA--ATGAAAGTTTGAGGCAATA-----TCAGT 1142
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170
|||||| ||| ||||| ||| |||||| | |||||| |||
Sbjct 1141 GATGCCTTTACATGTTTTGGACCGCACACATGCTACATTGA 1101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 945206674432
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |