Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq35909 138 2e-30 seq154158 102 2e-19 seq128807 93.3 8e-17 seq18495 93.3 8e-17 seq36891 91.5 3e-16 seq166568 89.7 1e-15 seq162762 77.0 6e-12 seq9698 77.0 6e-12 seq35604 75.2 2e-11 seq46366 73.4 7e-11 >seq35909 Length=842 Score = 138 bits (152), Expect = 2e-30 Identities = 107/126 (85%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||||||| ||| || ||||||||| | ||| | ||||| |||||||||| ||||| Sbjct 7 CCTTGGCCGATAGGCCTAGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTG 65 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| ||| ||||||||||||||| ||||||||||||| ||||||| | |||||||| | Sbjct 66 CAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAACTCGCGTTGACT 125 Query 311 ACGTCC 316 |||||| Sbjct 126 ACGTCC 131 >seq154158 Length=1230 Score = 102 bits (112), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| || ||| | ||| | |||||||||||| |||| |||| || Sbjct 987 GCTTCTTAGAGGGACCATGATCGCTTAGGCCAA-GGAAGTTTGAGGTGATAATAGGTATG 1045 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||| ||||||||| | || | || | | | |||||| | | |||||||| || Sbjct 1046 TGATGCCTTTAGATGTTTTAGG-CACATGTGTGTTACACTAATGTATTCAACGAGTCTAT 1104 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTT 217 ||||| ||| |||||||||||||||| Sbjct 1105 AACCTTAACCGACAGGTCTGGGTAATCTT 1133 >seq128807 Length=4782 Score = 93.3 bits (102), Expect = 8e-17 Identities = 112/149 (75%), Gaps = 4/149 (3%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| || ||| | ||| | |||||||||||| |||| |||| || Sbjct 3762 GCTTCTTAGAGGGACCATGATCGCTTAGGCCAA-GGAAGTTTGAGGTGATAATAGGTTTG 3704 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||| ||||||||| | || | || | | | |||||| | | |||||||| || Sbjct 3703 TGATGCCTTTAGATGTTTTAGG-CACATGTGTGTTACACTAATGTATTCAACGAGTCTAT 3645 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTT 217 |||||| || ||||| ||||||||| Sbjct 3644 AACCTTGATCGACAGGTCCAGGTAATCTT 3616 >seq18495 Length=3373 Score = 93.3 bits (102), Expect = 8e-17 Identities = 112/149 (75%), Gaps = 4/149 (3%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| || | ||| | ||| | |||||||||||| |||| | |||| Sbjct 3305 GCTTCTTAGAGGGACCATGGTCGCTTAGGCC-AGGGAAGTTTGAGGTGATAATATGTCTA 3247 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||||||||||||| | || | || | ||| |||| | | | ||| |||| || Sbjct 3246 TGATGCCCTTAGATGTTTTAGG-CACATGTGCGTTACATTAATGTATTCAATGAGTCTAT 3188 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTT 217 |||||| | ||||| |||||||||| Sbjct 3187 AACCTTGATTGATAGGTCCGGGTAATCTT 3159 >seq36891 Length=1840 Score = 91.5 bits (100), Expect = 3e-16 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||| ||| ||||||| || |||| |||| |||| ||| ||||| ||| |||| Sbjct 1649 CATTGCAATTGTTGGTCTTCAATGATGAATTCCTAATAAGTGCGAGTCATTAGCTTGCGT 1708 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| ||| ||||||||||||||| Sbjct 1709 TGACTACATCCCTGCCCTTTGTA 1731 >seq166568 Length=1131 Score = 89.7 bits (98), Expect = 1e-15 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 ||| |||||||||| |||| |||| |||||||| ||||||||| ||||||| ||| ||| Sbjct 951 TTGGTCTTCAACGATGAATTCCTAATAAGCGCGAGTCATCAGCTTGCGTTGACTACATCC 1010 Query 317 CTGCCCTTTGTA 328 |||||||||||| Sbjct 1011 CTGCCCTTTGTA 1022 >seq162762 Length=1399 Score = 77.0 bits (84), Expect = 6e-12 Identities = 81/104 (78%), Gaps = 6/104 (6%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCG-GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||| ||| | | | || ||| ||||||||||||||| ||||| |||| Sbjct 789 CTTCTTAGAGGGAATATGGTGGTTTAGGA-ATGAAAGTTTGAGGCAATATCAGGTTTGTG 731 Query 131 AT----GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 || || ||| ||||||||| |||||| || |||||| ||| Sbjct 730 ATACAAACCTTTACATGTTCTGGACCGCACACGTGCTACAGTGA 687 >seq9698 Length=8182 Score = 77.0 bits (84), Expect = 6e-12 Identities = 169/260 (65%), Gaps = 34/260 (13%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||||||| | | | || || || | ||||||||||||||||||| Sbjct 2882 GCTTCTTAGAGGGACTAT-GACAGTTTAGGTGAAGGCAATTTGAGGCAATAACAGGTCCA 2940 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 | |||| |||||||||| ||| ||| | | | |||| ||| | |||||||| || Sbjct 2941 TAATGCTCTTAGATGTTTTGGATTGCATGTGTGTTACATTGATGTATTCAACGAGTCTAT 3000 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 ||||| | | | | ||||||| | Sbjct 3001 AGTCTTGGTTGACAAGCCAAAGTAATCT-------------------------------T 3029 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| ||| |||||||| |||||| ||||||| | | | ||||||| |||||| Sbjct 3030 TGCAATTGTTGGTCTTCAACAAGGAATTCCTAGTATACATGAGCCATCAGCTTACGTTGA 3089 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||||||| | || |||||| Sbjct 3090 CTACGTCCTTTCCTTTTGTA 3109 >seq35604 Length=6738 Score = 75.2 bits (82), Expect = 2e-11 Identities = 78/101 (77%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | || ||| |||| ||||||||||||| |||||| | Sbjct 2945 GCTTCTTAGAGGGACTATGATAGTTTAGGCGAAGGAAATTTGAGGCAATAATAGGTCTAT 3004 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||| |||||||||| ||| ||| | | | |||| ||| Sbjct 3005 AATGCTCTTAGATGTTTTGGATTGCATGTGTGTTACATTGA 3045 >seq46366 Length=1809 Score = 73.4 bits (80), Expect = 7e-11 Identities = 78/101 (77%), Gaps = 9/101 (9%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||| |||||||| | | ||||| ||| ||||||||||||||| || || Sbjct 1194 CTTCTTAGGGGGACTATGGTGGTTCAAGA--ATGAAAGTTTGAGGCAATA-----TCAGT 1142 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||| ||| ||||| ||| |||||| | |||||| ||| Sbjct 1141 GATGCCTTTACATGTTTTGGACCGCACACATGCTACATTGA 1101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 945206674432