Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq74092 172 2e-40 seq130893 104 8e-20 seq105314 96.9 1e-17 seq144769 95.1 4e-17 seq52100 82.4 3e-13 >seq74092 Length=2799 Score = 172 bits (190), Expect = 2e-40 Identities = 321/462 (69%), Gaps = 27/462 (6%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || | || ||| |||| Sbjct 1212 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTTACTGGCCTTGGA 1271 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 1272 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 1331 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || ||||| |||||| |||| || | | || Sbjct 1332 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 1389 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG----TCATTGCGACTTACCAAA 266 | || | | ||||||||||| |||||||| | |||| || |||||||| Sbjct 1390 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCCTTACCAAC 1449 Query 267 CCATTGCAAACTCCGAATGC--GC----ATCAGTTTTACCGCGGGAGTGAGGGCATGGGT 320 || | ||||||||||| | || ||| || ||| || || ||||| Sbjct 1450 CCCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTAC----AGACAGACTTTTTGGGT 1505 Query 321 GCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGAC 380 |||||| ||| ||||||| || | || || | ||||||| ||| || | Sbjct 1506 GCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAAT 1565 Query 381 AGCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAG 438 || ||| || || |||| |||| || | |||| | |||| || |||||||||| Sbjct 1566 CACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAG 1621 Query 439 CAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||| || ||| |||| |||||| |||||||| ||| || Sbjct 1622 CAGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 1662 >seq130893 Length=4206 Score = 104 bits (114), Expect = 8e-20 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 36 ACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGG 95 ||||||| | |||||||||| ||| | ||||||||| | ||| | || |||||| Sbjct 3171 ACCCGAACCTAAGTGATCTATTCATAACTAGGATGAAGCTTGGGTGAAACCAAGTGGAGG 3112 Query 96 TCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAA 155 ||| || | | | |||||||| ||| || ||||| |||| ||||||||||| || | Sbjct 3111 TCCAAATCAATTGATGTTGAAGAATAAGCCAATGAGTTGTGATTAGGGGTGAAATGCCAC 3052 Query 156 ACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 ||||||| || |||| |||||||| || ||| Sbjct 3051 TCAAACTTAGAGATAGTTGGTTCTCCCCAAAA 3020 >seq105314 Length=5322 Score = 96.9 bits (106), Expect = 1e-17 Identities = 112/148 (76%), Gaps = 5/148 (3%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||| | |||||||| ||||| ||||||||||| | ||| | || ||||| Sbjct 5317 GACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGAG 5258 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 |||| |||| | | |||||||||| | || ||||||| ||||| || |||||||| | | Sbjct 5257 GTCCAAACCGAGTGATGTTGAAAAGTCAGTGGATGAGTTGTGGTTA-GGGTGAAATGTCA 5199 Query 155 AACAAACTTGGAAA--TAGCTGGTTCTC 180 ||||| |||| ||||| |||||| Sbjct 5198 CTCAAAC--CGAAAGCTAGCTAGTTCTC 5173 >seq144769 Length=10391 Score = 95.1 bits (104), Expect = 4e-17 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 46 AAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCA 105 |||||||||| ||||| |||||||||| | ||| | || || ||||||||||| | Sbjct 5866 AAGTGATCTATCCATGATCAGGATGAAGCTTGGGTGAAACTATGTGAAGGTCCGAACCGA 5807 Query 106 CTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGG 165 || |||||||| ||| |||||||||| | ||| ||||| ||||| | | | ||| | | Sbjct 5806 CTGATGTTGAAGAATCAGGGGATGAGTTATGGTTAGGGTTGAAATGTCACTCGAACCTAG 5747 Query 166 AAATAGCTGGTTCTCTCCGAAA 187 | | || | ||||| ||||| Sbjct 5746 AGCTGGCCGATTCTCCTCGAAA 5725 >seq52100 Length=4410 Score = 82.4 bits (90), Expect = 3e-13 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 90 TGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAA 149 ||||||||| |||| ||| |||||||| ||| | ||||||| ||||| ||||||||||| Sbjct 3745 TGGAGGTCCAAACCGACTGATGTTGAAGAATCAACGGATGAGTTGTGGTTAGGGGTGAAA 3686 Query 150 GGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 || | ||| | ||| ||||| ||| || |||||| Sbjct 3685 TGCCACTTGAACCTAGAACTAGCTAGTTATCCCCGAAA 3648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1686044338176