Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1
_202015-09-10] 210,444 sequences; 539,624,286 total letters
Query= AAMG01002193.1
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
seq74092 172 2e-40
seq130893 104 8e-20
seq105314 96.9 1e-17
seq144769 95.1 4e-17
seq52100 82.4 3e-13
>seq74092
Length=2799
Score = 172 bits (190), Expect = 2e-40
Identities = 321/462 (69%), Gaps = 27/462 (6%)
Strand=Plus/Plus
Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93
||||||||||| | |||||| ||||| |||| ||||| | || | || ||| ||||
Sbjct 1212 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTTACTGGCCTTGGA 1271
Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153
|| |||||||||| |||| | ||||| |||||||| ||||| ||||||||||||||
Sbjct 1272 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 1331
Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213
|| ||| | ||| |||||||||| || ||||| |||||| |||| || | | ||
Sbjct 1332 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 1389
Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG----TCATTGCGACTTACCAAA 266
| || | | ||||||||||| |||||||| | |||| || ||||||||
Sbjct 1390 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCCTTACCAAC 1449
Query 267 CCATTGCAAACTCCGAATGC--GC----ATCAGTTTTACCGCGGGAGTGAGGGCATGGGT 320
|| | ||||||||||| | || ||| || ||| || || |||||
Sbjct 1450 CCCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTAC----AGACAGACTTTTTGGGT 1505
Query 321 GCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGAC 380
|||||| ||| ||||||| || | || || | ||||||| ||| || |
Sbjct 1506 GCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAAT 1565
Query 381 AGCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAG 438
|| ||| || || |||| |||| || | |||| | |||| || ||||||||||
Sbjct 1566 CACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAG 1621
Query 439 CAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480
|||||| || ||| |||| |||||| |||||||| ||| ||
Sbjct 1622 CAGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 1662
>seq130893
Length=4206
Score = 104 bits (114), Expect = 8e-20
Identities = 114/152 (75%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 36 ACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGG 95
||||||| | |||||||||| ||| | ||||||||| | ||| | || ||||||
Sbjct 3171 ACCCGAACCTAAGTGATCTATTCATAACTAGGATGAAGCTTGGGTGAAACCAAGTGGAGG 3112
Query 96 TCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAA 155
||| || | | | |||||||| ||| || ||||| |||| ||||||||||| || |
Sbjct 3111 TCCAAATCAATTGATGTTGAAGAATAAGCCAATGAGTTGTGATTAGGGGTGAAATGCCAC 3052
Query 156 ACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187
||||||| || |||| |||||||| || |||
Sbjct 3051 TCAAACTTAGAGATAGTTGGTTCTCCCCAAAA 3020
>seq105314
Length=5322
Score = 96.9 bits (106), Expect = 1e-17
Identities = 112/148 (76%), Gaps = 5/148 (3%)
Strand=Plus/Minus
Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94
|||||||| | |||||||| ||||| ||||||||||| | ||| | || |||||
Sbjct 5317 GACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGAG 5258
Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154
|||| |||| | | |||||||||| | || ||||||| ||||| || |||||||| | |
Sbjct 5257 GTCCAAACCGAGTGATGTTGAAAAGTCAGTGGATGAGTTGTGGTTA-GGGTGAAATGTCA 5199
Query 155 AACAAACTTGGAAA--TAGCTGGTTCTC 180
||||| |||| ||||| ||||||
Sbjct 5198 CTCAAAC--CGAAAGCTAGCTAGTTCTC 5173
>seq144769
Length=10391
Score = 95.1 bits (104), Expect = 4e-17
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 46 AAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCA 105
|||||||||| ||||| |||||||||| | ||| | || || ||||||||||| |
Sbjct 5866 AAGTGATCTATCCATGATCAGGATGAAGCTTGGGTGAAACTATGTGAAGGTCCGAACCGA 5807
Query 106 CTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGG 165
|| |||||||| ||| |||||||||| | ||| ||||| ||||| | | | ||| | |
Sbjct 5806 CTGATGTTGAAGAATCAGGGGATGAGTTATGGTTAGGGTTGAAATGTCACTCGAACCTAG 5747
Query 166 AAATAGCTGGTTCTCTCCGAAA 187
| | || | ||||| |||||
Sbjct 5746 AGCTGGCCGATTCTCCTCGAAA 5725
>seq52100
Length=4410
Score = 82.4 bits (90), Expect = 3e-13
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 90 TGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAA 149
||||||||| |||| ||| |||||||| ||| | ||||||| ||||| |||||||||||
Sbjct 3745 TGGAGGTCCAAACCGACTGATGTTGAAGAATCAACGGATGAGTTGTGGTTAGGGGTGAAA 3686
Query 150 GGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187
|| | ||| | ||| ||||| ||| || ||||||
Sbjct 3685 TGCCACTTGAACCTAGAACTAGCTAGTTATCCCCGAAA 3648
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1686044338176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |