Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq177777 77.0 6e-12 seq74092 77.0 6e-12 seq72437 73.4 7e-11 >seq177777 Length=896 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 77 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 18 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 17 GGCGAGCGAGAGCGGAT 1 >seq74092 Length=2799 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 346 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 405 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 406 GGCGAGCGAGAGCGGAT 422 >seq72437 Length=2941 Score = 73.4 bits (80), Expect = 7e-11 Identities = 81/107 (76%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 || ||||| ||| || | |||| | ||| ||||||| |||||||| |||||| | Sbjct 884 TGTTGAATCCATGGGCAGGCAAGAAACAACCTAGCGAACTAAAACATCTTAGTAGCCAAA 825 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGG 242 |||||||||| ||| | ||||||| ||||||| |||| |||||| Sbjct 824 GGAAAAGAAAGCAAAAGTGATTCCCGTAGTAGTGATGAGCAAAATGG 778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 916467282304