Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq206155 697 0.0 seq14572 208 2e-51 seq14571 152 2e-34 seq91407 145 2e-32 seq84775 143 9e-32 seq118487 111 5e-22 seq198982 102 3e-19 seq113934 100 9e-19 seq39337 96.9 1e-17 seq206148 95.1 4e-17 seq166493 93.3 1e-16 seq40962 87.8 6e-15 seq153649 78.8 3e-12 seq67961 78.8 3e-12 seq21957 78.8 3e-12 >seq206155 Length=6340 Score = 697 bits (772), Expect = 0.0 Identities = 476/532 (89%), Gaps = 4/532 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 3557 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 3616 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 3617 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 3676 Query 127 GGCCCGC--GAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATT 184 ||| ||| | | |||| ||| || || | ||| || |||| |||| Sbjct 3677 GGCGCGCTGGGCGCGCCTTGGGTCCAAAAGGAGGG-GATGATCCCCGCCTCCGATTCACG 3735 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAAC-GGCTCCCAC 243 || ||||||||| |||| ||| ||||||||||||||||| ||||| | ||||||||| Sbjct 3736 GAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCGTTTCCGGCTCCCAC 3795 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3796 TTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 3855 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 3856 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAG 3915 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3916 ACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 3975 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3976 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 4035 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 4036 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATC 4087 >seq14572 Length=4867 Score = 208 bits (230), Expect = 2e-51 Identities = 177/220 (80%), Gaps = 16/220 (7%) Strand=Plus/Minus Query 316 TGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTG 375 |||||| || ||||| || | ||| |||||||||||||||| ||||| ||||||||| Sbjct 3002 TGATTCTGCTAAGCCTATTTCTCTGGTTGTGGTTTCGCTAGAT-GTAGAAAGGGACAGTA 2944 Query 376 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCT 435 ||||||||||| ||||||||||| || | |||||||| |||||| Sbjct 2943 ACAATCTCGTTAACCCATTCATGCGTGTTATTAATTAGA---------------CTACCT 2899 Query 436 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA 495 ||||||||||||||||||| || ||||||| |||| |||| ||||||||||||||||||| Sbjct 2898 TAAGAGAGTCATAGTTACTTCCACCGTTTATCCGCACTTGATTGAATTTCTTCACTTTGA 2839 Query 496 CATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||| ||||| ||||||||||||||||| ||| | |||| Sbjct 2838 CATTTAGAGCGTTGGGCAGAAATCACATTACGTGAGCATC 2799 >seq14571 Length=4937 Score = 152 bits (168), Expect = 2e-34 Identities = 158/209 (76%), Gaps = 16/209 (8%) Strand=Plus/Minus Query 316 TGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTG 375 |||||| | ||||| || | |||| |||||||| ||| ||| ||| | ||||| ||| Sbjct 1809 TGATTCTACTAAGCCTATTTCTTTGGTTGTGGTTTTGCTGGAT-GTAAAAAGGGATAGTA 1751 Query 376 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCT 435 ||||||| ||||||||||||||| | | | |||||||| ||| || Sbjct 1750 AGAATCTCATTAATCCATTCATGCACATTATTAATTAGA---------------CTATCT 1706 Query 436 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA 495 ||||||||||||| | ||||| |||||| || |||| ||||||||||||||||||| Sbjct 1705 TAAGAGAGTCATAACTGCTCCCATCGTTTATTCGTACTTGATTGAATTTCTTCACTTTGA 1646 Query 496 CATTCAGAGCACTGGGCAGAAATCACATT 524 ||| |||||| |||| |||||||||||| Sbjct 1645 TATTTAGAGCATTGGGTAGAAATCACATT 1617 >seq91407 Length=2543 Score = 145 bits (160), Expect = 2e-32 Identities = 159/209 (76%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAAC--GGCTCCCACTT 245 ||| ||||| |||| ||| | ||||||||||||||| | | | |||||| |||| Sbjct 1033 TAAATAAAATAACGTTAAAAGCAGTGGTATTTCACTTTCTCTGTTTTTTGGCTCCTACTT 1092 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 || |||| | || |||||||||| ||||| |||| ||||||| |||||| | |||| Sbjct 1093 ATCTTACATTTTTCGAGTCATTTCAAAAAGTTAAACTAAAGTCAAGTTCAACAAGATCTT 1152 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||| || | || || | | | | |||| |||||| | ||| ||||||||||||| Sbjct 1153 CTTTCTTCGTTAGTTTCGACGAACACATTCCATTGGCTATATTTT-GCTAGATAGTAGAG 1211 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATT 394 ||||| | || |||||||||||||||||| Sbjct 1212 AGGGATAATGAGAATCTCGTTAATCCATT 1240 >seq84775 Length=5954 Score = 143 bits (158), Expect = 9e-32 Identities = 197/279 (71%), Gaps = 25/279 (9%) Strand=Plus/Plus Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 |||||| ||||||| |||||||||| | |||| |||| |||||||||||||||| |||| Sbjct 5613 ATTCTATACCTCTCGAGTCATTTCATAGAGTCAAACTAAAGTCAAGCTCAACAGG-TCTT 5671 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||| || || |||||| ||||||||| | ||| |||| Sbjct 5672 CTTTCCCTACT----------------TTTCCTTGGTTGTGGTTTCATTGAATACTAGAC 5715 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 | ||| | ||||| ||| ||| || ||| |||| | | |||||| | ||| ||| Sbjct 5716 AAAAACAATAAAAATCTAGTTCATCTATCCATATGCGTGATTGCTTAGATAATGAGACAT 5775 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 ||| | | |||||||||||||| |||| || || | | || |||||||||| Sbjct 5776 TTGACGAGCTTAAGAGAGTCATGGTTAATC--------TATTTGTGTTTAGTTGAATTTC 5827 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATT 524 | | ||| ||||||| |||||| | |||||| ||||| Sbjct 5828 CTTATTTTAACATTCAAAGCACTTAGTAGAAATTACATT 5866 >seq118487 Length=7640 Score = 111 bits (122), Expect = 5e-22 Identities = 98/122 (80%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 272 AAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCC 331 ||||| |||| ||||||| |||||| | ||||||||| ||| || || || ||| ||| Sbjct 6150 AAAGTANNACTAAAGTCAAGTTCAACAAGATCTTCTTTCTCCGTTGTTTTCGACAAACCC 6209 Query 332 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 391 ||||| ||||||||| ||| |||| ||||||| || ||| |||||||||||||||| Sbjct 6210 GTTCCATTGGCTGTGTTTT-GCTAAATAGTAGGCAGAAACAACGGGAATCTCGTTAATCT 6268 Query 392 AT 393 || Sbjct 6269 AT 6270 >seq198982 Length=7407 Score = 102 bits (112), Expect = 3e-19 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 411 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGC 470 ||||||| || ||||| |||| ||||||||||| ||||||||| | || |||| || Sbjct 1271 TAGATGATAAGACATTTTGCTATCTTAAGAGAGTTATAGTTACTTCTACCATTTATTCGT 1330 Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 |||| | ||||| || ||||||||||| |||||||| |||| ||||| |||| || | Sbjct 1331 GCTTAACTAAATTTATTTACTTTGACATTTAGAGCACTAGGCAAGAATCATATTGTGTGA 1390 Query 531 ACAT 534 ||| Sbjct 1391 GCAT 1394 >seq113934 Length=2984 Score = 100 bits (110), Expect = 9e-19 Identities = 105/133 (79%), Gaps = 5/133 (4%) Strand=Plus/Plus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG-C 342 ||||| |||| |||||||| || || | | |||| | ||||| || |||| ||| | Sbjct 1842 GAGTCGAGCTTAACAGGGTTTTTTTAAC--GTTGAT-CTGCCAAACCGGTTCTCTTAAAC 1898 Query 343 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG 402 |||||||||| | ||||||||| |||| ||| ||||||||||| ||||||| | || || Sbjct 1899 TGTGGTTTCGTTGGATAGTAGAGAGGGT-AGTTGGAATCTCGTTGATCCATTAACGCACG 1957 Query 403 TCACTAATTAGAT 415 ||||| ||||||| Sbjct 1958 TCACTCATTAGAT 1970 >seq39337 Length=3241 Score = 96.9 bits (106), Expect = 1e-17 Identities = 103/132 (78%), Gaps = 7/132 (5%) Strand=Plus/Plus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 ||||| |||| |||||||| || || | | |||| | ||||| ||||||| ||| || Sbjct 364 GAGTCGAGCTTAACAGGGTTTTTTTAAC--GTTGAT-CTGCCAAACCCGTTCTCTTAACT 420 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 |||||||| | ||||||||| |||| | ||||||||| |||||||||| | | ||| Sbjct 421 GTGGTTTCTTTGGATAGTAGAGAGGGT-ATTGGGAATCTAGTTAATCCAT---TACACGT 476 Query 404 CACTAATTAGAT 415 |||| ||||||| Sbjct 477 CACTCATTAGAT 488 >seq206148 Length=2226 Score = 95.1 bits (104), Expect = 4e-17 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| || | ||||||||||| |||| ||| | |||||||||||| |||||| Sbjct 1913 CTTTTATTCCATAGGAGATTTCTATTCTAGTTGATCTCATCTTAGGACACCTACGTTATC 1972 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||| ||||||| | ||| |||||||||||||||| |||||||| Sbjct 1973 TTTTAATAGATGTGTCATCCCTGCCAAACTCCCCACCTAACAATGTC 2019 >seq166493 Length=14661 Score = 93.3 bits (102), Expect = 1e-16 Identities = 70/82 (85%), Gaps = 3/82 (4%) Strand=Plus/Minus Query 350 TCGCTAGATAGTAGATAGGGACAGTGGG---AATCTCGTTAATCCATTCATGCGCGTCAC 406 || || ||||||||| ||||||||| || |||||||| ||||||||| ||| || || Sbjct 2466 TCCCTGGATAGTAGACAGGGACAGTCGGGAAAATCTCGTCAATCCATTCTTGCCCGGAAC 2407 Query 407 TAATTAGATGACGAGGCATTTG 428 |||||||||||||||||||||| Sbjct 2406 TAATTAGATGACGAGGCATTTG 2385 >seq40962 Length=8421 Score = 87.8 bits (96), Expect = 6e-15 Identities = 75/92 (82%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 350 TCGCTAGATAGTAGATAGGGACAGTGGG---AATCTCGTTAATCCATTCATGCGCGTCAC 406 || || ||| ||||| ||||||||| | |||||||| ||||||||| ||| || || Sbjct 7512 TCCCTGGATTGTAGACAGGGACAGTCCGGAAAATCTCGTCAATCCATTCTTGCCCGGAAC 7453 Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAA 438 |||||||||||||||||||||| | |||||| Sbjct 7452 TAATTAGATGACGAGGCATTTGATTGCCTTAA 7421 >seq153649 Length=14578 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 14222 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 14281 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 14282 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 14327 >seq67961 Length=1552 Score = 78.8 bits (86), Expect = 3e-12 Identities = 112/156 (72%), Gaps = 10/156 (6%) Strand=Plus/Plus Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA----CG 235 |||| | |||||||| | | ||| ||||| |||||||||| || | | | Sbjct 1347 TCATGAAATAAGTAAACTACTGTTAAAAGTAGTAGTATTTCACT----CCAACATTTCCA 1402 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 |||| |||||| || ||||| ||||||||||| |||| ||||||| ||||||| | Sbjct 1403 ACTCCTACTTATCCTTTGCCTCT--AGTCATTTCACGAAGTTAGACTAGACTCAAGCTAA 1460 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCC 331 ||||||| | |||| | ||||| ||||||||| Sbjct 1461 GCAGGGTCATTTTTCTTCATTGATTTTGCCAAGCCC 1496 >seq21957 Length=3864 Score = 78.8 bits (86), Expect = 3e-12 Identities = 112/156 (72%), Gaps = 10/156 (6%) Strand=Plus/Minus Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA----CG 235 |||| | |||||||| | | ||| ||||| |||||||||| || | | | Sbjct 1544 TCATGAAATAAGTAAACTACTGTTAAAAGTAGTAGTATTTCACT----CCAACATTTCCA 1489 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 |||| |||||| || ||||| ||||||||||| |||| ||||||| ||||||| | Sbjct 1488 ACTCCTACTTATCCTTTGCCTCT--AGTCATTTCACGAAGTTAGACTAGACTCAAGCTAA 1431 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCC 331 ||||||| | |||| | ||||| ||||||||| Sbjct 1430 GCAGGGTCATTTTTCTTCATTGATTTTGCCAAGCCC 1395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1631758819712