Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1
_202015-09-10] 210,444 sequences; 539,624,286 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq143471 338 2e-90
seq35181 325 1e-86
seq143472 194 5e-47
seq72297 150 5e-34
seq179283 138 3e-30
seq30811 93.3 1e-16
seq172931 87.8 5e-15
seq161993 82.4 2e-13
>seq143471
Length=789
Score = 338 bits (374), Expect = 2e-90
Identities = 334/423 (79%), Gaps = 8/423 (2%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| |||| ||| ||||| |||| | |||||||| ||||||| |
Sbjct 2 GTACTCATTCCAATTACCAGACTTAAA-GAGCCTGGTATTATTATTTATTATCACTACTT 60
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
|| | |||| ||||||||||||||| || ||| ||||||||||||||||||||| ||||
Sbjct 61 CCTCTTGTCAGGATTGGGTAATTTGTGCACCTATTGCCTTCCTTGGATGTGGTAGTCGTT 120
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||| ||| | || |||||| |||||| |||| || | |||| | ||||||| |||
Sbjct 121 TCTCAGGTTCCTTTTCTGGAATCAAACCCTGATTCTCCATCACCCATCAATACCATAGTA 180
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
| || ||||||||||| |||||||||||||||| |||||||||||| |||||| |
Sbjct 181 GACCCTTATCCTACCATTGAAAGTTGATAGGGCATAAATTTGAATGATGTGTCGCCGACA 240
Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AG-GAGCCCCGAAG--GGCG 295
| | ||| || ||| | || |||||| |||||||| || || | | ||| | |
Sbjct 241 CGATGGCAGTGTGATCCATTGAGTTATCATGAATCATCAGAGTAATGGGCAAAGCCTGTG 300
Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTC-CGAAGTCGGGGTTTTTAGCATGTATTAG 354
| | |||||| ||||||||| | || ||| ||||| ||||||| | ||| |||| ||
Sbjct 301 TCGACCTTTTATGTAATAAATATATCCATTCTAGAAGTTGGGGTTTATGGCACGTATCAG 360
Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414
|||||||||||| | ||||||| |||| || |||||||||| |||| ||||||||||
Sbjct 361 CTCTAGAATTACTATGGTTATCTGAGTAGCAA-ATACTATCAAACAAACTATAACTGATT 419
Query 415 TAA 417
|||
Sbjct 420 TAA 422
>seq35181
Length=1261
Score = 325 bits (360), Expect = 1e-86
Identities = 351/458 (77%), Gaps = 9/458 (2%)
Strand=Plus/Plus
Query 54 ACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGT 113
||||||||||| |||| |||||||||||||| | || | ||||||| ||| ||||||||
Sbjct 444 ACTACCTCCCCATGTCAGGATTGGGTAATTTATGTGCTTACTGCCTTTCTTAGATGTGGT 503
Query 114 AGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATAC 173
|| ||||| || |||| ||| | | | ||||| |||||| | |||||| | ||||
Sbjct 504 AGTTGTTTCCCAAGCTCTTTCTTTGCAGTTGAACC-TAATTCTTCATTACCCATAAATAC 562
Query 174 CATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATC 233
||| |||| || |||||||||||| ||| ||||||||| |||||||| ||||| | |
Sbjct 563 CATAGTAGACCCCTATCCTACCATAAAAAATTGATAGGGTAGAAATTTAAATGATGCGTT 622
Query 234 GCCGGCTCAA-GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGG 292
| | || || |||||||| ||| |||||| |||||||| ||| | |||
Sbjct 623 ATCAACATAATGGTCATGCGATCGGTTGAGTTATCATGAATCATCAATGCAATGGGAAAA 682
Query 293 GCGTTGGTT----TTTTATCTAATAAATACACCCCTTCCGAA-GTCGGGGTTTTTAGCAT 347
|| ||| ||||||||||||||| || |||||| || ||| ||| | | |||
Sbjct 683 GCCCACGTTAACCTTTTATCTAATAAATTCATCCCTTCTAAAAGTCACGGTATGTTGCAC 742
Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA 407
||||||||||||||| ||| ||| ||||| |||| | | ||| || |||||||| |||
Sbjct 743 GTATTAGCTCTAGAACTACTACGACTATCCGAGTAGCA-GATACCATTAAATAAACTATA 801
Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCA 466
||||||||||||| |||||| ||||||| || | ||| || ||||||| |||| ||
Sbjct 802 ACTGATTTAATGACCCATTCATAGTTTCATAGTTTGAATTAGTTCATACTTAAACATTCA 861
Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||| ||| ||
Sbjct 862 TGGCTTAATCTTTGAGACAAGCATATGACTAATGGTAG 899
>seq143472
Length=1090
Score = 194 bits (214), Expect = 5e-47
Identities = 253/342 (74%), Gaps = 15/342 (4%)
Strand=Plus/Plus
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
||||||| |||||||||||||||| ||||| | |||| ||||||||| | |||
Sbjct 540 CCCGTGTTAGGATTGGGTAATTTGCATGCCTGTTACCTT----GGATGTGGTGATCATTT 595
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||| |||| | ||||||| |||||||||| || | |||| | ||||||| ||
Sbjct 596 CTCAGGC-CCCTTT--GGAATCGGACCCTAATTCTCCATCACCCATCAATACCATAGTGT 652
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC-T 240
||| |||| |||||||| |||||||||||| || |||||||||||| | || | || |
Sbjct 653 GCCCCTATTCTACCATCAAAAGTTGATAGGACATAAATTTGAATGATGCGTCATCAGCAT 712
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA----AGGAGCCCCGAAGGGCGT 296
| |||||||| || | ||||||||| |||| ||| || | || | | |||
Sbjct 713 AATGGCCATGCAATCCATTAAGTTATCATGATTCATCAGAACAATAGGCAAAACCCACGT 772
Query 297 TGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGC 355
|||| |||||||||| || ||||||| |||| | |||| | |||||| || ||
Sbjct 773 CAACCTTTTGTCTAATAAATGCATCCCTTCCAAAAGTTGAAGTTTGTTGCATGTGTTGGC 832
Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAA 397
| ||| ||||| ||| |||||| |||| || ||| |||||
Sbjct 833 TGTAG-ATTACTACGATTATCCGAGTAG-CAGATACCATCAA 872
>seq72297
Length=3589
Score = 150 bits (166), Expect = 5e-34
Identities = 199/269 (74%), Gaps = 9/269 (3%)
Strand=Plus/Minus
Query 82 TTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAA 141
||| ||| |||||| | ||| || |||| |||||||||||||| ||||||||| | ||
Sbjct 3462 TTTACGCACCTGCTACTTTCTTTCGATGCAGTAGCCGTTTCTCAAGCTCCCTCTTCAAAA 3403
Query 142 TCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAA 201
|||||||||||||| | | | || ||| ||| ||||||| ||||||||||||| |
Sbjct 3402 TCGAACCCTAATTCTCTATCAATTGTCAATATCATAGTAGGCCCCTATCCTACCATC--A 3345
Query 202 AGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA-GGCCATGCGATTCGTTA 260
|||||||| |||| || ||||||||| || |||| ||| ||| || | || || |
Sbjct 3344 AGTTGATACGGCAAAATTTTGAATGATGTGTCATCGGCACAACGGCTATACAATCTGTCA 3285
Query 261 AGT--TATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATAC 318
||| ||| |||||||| ||| ||| || | || | | ||| |||||| ||| |
Sbjct 3284 AGTTATATCATGAATCATCAA--AGCAACG-GGTGCATCAGCCTTTCATCTAAATAATGC 3228
Query 319 ACCCCTTCC-GAAGTCGGGGTTTTTAGCA 346
| ||||||| ||||| ||||| | |||
Sbjct 3227 ATCCCTTCCAAAAGTCAAGGTTTGTTGCA 3199
>seq179283
Length=3550
Score = 138 bits (152), Expect = 3e-30
Identities = 284/411 (69%), Gaps = 31/411 (8%)
Strand=Plus/Plus
Query 78 GTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC 137
||||||||| | | || || |||||||||||||||||| | |||| |||||| | ||||
Sbjct 2684 GTAATTTGCACACATGTTGTCTTCCTTGGATGTGGTAGTCATTTCCCAGGCTTC-TCTCT 2742
Query 138 GGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCAT 197
| |||| |||| |||||| || || ||| | |||| | |||||||
Sbjct 2743 GAAATCAAACCATAATTC-----------TTCAT--CATTTCA--CCACCA--CTACCAT 2785
Query 198 CGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC-TCAAGGCCATGCGATTC 256
||| ||||||||| | ||||||||||| ||| | ||| | | || | ||| ||||
Sbjct 2786 TAAAAATTGATAGGGTAAGAATTTGAATGATACATTGTTGGCATGATGGTCGTGCAATTC 2845
Query 257 GTTAAGTTATTAT--GAATCACCAAGGAGCCCCGAAGGGCGTTGGTTT----TTTATCTA 310
| |||||||||| |||| | || | ||| | ||| | ||||||||
Sbjct 2846 ATCAAGTTATTATATGAATTATCATAGCAATAAGAAAAAC-TTGTATCAACCTTTATCTA 2904
Query 311 ATAAATACACCCCTTCCGAAG--TCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCA 368
||| || || |||| || | |||||| | | || ||||| |||||||||||| |
Sbjct 2905 ATAGATGCATTCCTTTTAAAAATTGAGGGTTTGTTGAATATATTAACTCTAGAATTACTA 2964
Query 369 CGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCG 428
|||||| || ||||| || ||| || ||| ||| ||| |||||||||| || ||||
Sbjct 2965 TGGTTATTCAAGTAGT-AGATACCATTAAACAAATTATAGCTGATTTAATAAGTCATTTA 3023
Query 429 CAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478
|||||||| | | | | | | ||| || || ||||| ||||||| ||
Sbjct 3024 TAGTTTCACAATCTAATCTAGTTCATATGTATACTTGCAT-GCTTAATGTT 3073
>seq30811
Length=6836
Score = 93.3 bits (102), Expect = 1e-16
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 82 TTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAA 141
|||| ||||||||| ||||| || |||||||||||||||||||| ||| ||||| | ||
Sbjct 6755 TTTGTGCGCCTGCTACCTTCTTTCGATGTGGTAGCCGTTTCTCAAGCTTCCTCTTTGAAA 6814
Query 142 TCGAACCCTAATTC 155
||||||||||||||
Sbjct 6815 TCGAACCCTAATTC 6828
>seq172931
Length=10398
Score = 87.8 bits (96), Expect = 5e-15
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 192 TACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC-AAGGCCATG 250
|||||||||||||||||||| ||||||||||||||| | ||| |||| | | || ||||
Sbjct 5670 TACCATCGAAAGTTGATAGGACAGAAATTTGAATGATGCGTCGTCGGCACGATGGTCATG 5729
Query 251 CGATTCGTTAAGTTATTATGAATCA 275
| || || ||||||| ||||||||
Sbjct 5730 CAATATGTCAAGTTATCATGAATCA 5754
>seq161993
Length=9016
Score = 82.4 bits (90), Expect = 2e-13
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 42 GTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTC 101
|| |||||||||||||||| | |||| |||| | ||||||| | || | |||||
Sbjct 3823 GTTTTTATTGTCACTACCTTCTTGTGTTAGGATGTGATAATTTGTCTGTTTGTTACCTTC 3882
Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATT 154
|| |||||| ||| | ||||||| |||||| ||| |||| ||||||||||
Sbjct 3883 CTGAGATGTGATAGTCATTTCTCACACTCCCTATCCAAAATCAAACCCTAATT 3935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1507221453824
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