Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq143471 338 2e-90 seq35181 325 1e-86 seq143472 194 5e-47 seq72297 150 5e-34 seq179283 138 3e-30 seq30811 93.3 1e-16 seq172931 87.8 5e-15 seq161993 82.4 2e-13 >seq143471 Length=789 Score = 338 bits (374), Expect = 2e-90 Identities = 334/423 (79%), Gaps = 8/423 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| ||| ||||| |||| | |||||||| ||||||| | Sbjct 2 GTACTCATTCCAATTACCAGACTTAAA-GAGCCTGGTATTATTATTTATTATCACTACTT 60 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || | |||| ||||||||||||||| || ||| ||||||||||||||||||||| |||| Sbjct 61 CCTCTTGTCAGGATTGGGTAATTTGTGCACCTATTGCCTTCCTTGGATGTGGTAGTCGTT 120 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||| ||| | || |||||| |||||| |||| || | |||| | ||||||| ||| Sbjct 121 TCTCAGGTTCCTTTTCTGGAATCAAACCCTGATTCTCCATCACCCATCAATACCATAGTA 180 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | || ||||||||||| |||||||||||||||| |||||||||||| |||||| | Sbjct 181 GACCCTTATCCTACCATTGAAAGTTGATAGGGCATAAATTTGAATGATGTGTCGCCGACA 240 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AG-GAGCCCCGAAG--GGCG 295 | | ||| || ||| | || |||||| |||||||| || || | | ||| | | Sbjct 241 CGATGGCAGTGTGATCCATTGAGTTATCATGAATCATCAGAGTAATGGGCAAAGCCTGTG 300 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTC-CGAAGTCGGGGTTTTTAGCATGTATTAG 354 | | |||||| ||||||||| | || ||| ||||| ||||||| | ||| |||| || Sbjct 301 TCGACCTTTTATGTAATAAATATATCCATTCTAGAAGTTGGGGTTTATGGCACGTATCAG 360 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 |||||||||||| | ||||||| |||| || |||||||||| |||| |||||||||| Sbjct 361 CTCTAGAATTACTATGGTTATCTGAGTAGCAA-ATACTATCAAACAAACTATAACTGATT 419 Query 415 TAA 417 ||| Sbjct 420 TAA 422 >seq35181 Length=1261 Score = 325 bits (360), Expect = 1e-86 Identities = 351/458 (77%), Gaps = 9/458 (2%) Strand=Plus/Plus Query 54 ACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGT 113 ||||||||||| |||| |||||||||||||| | || | ||||||| ||| |||||||| Sbjct 444 ACTACCTCCCCATGTCAGGATTGGGTAATTTATGTGCTTACTGCCTTTCTTAGATGTGGT 503 Query 114 AGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATAC 173 || ||||| || |||| ||| | | | ||||| |||||| | |||||| | |||| Sbjct 504 AGTTGTTTCCCAAGCTCTTTCTTTGCAGTTGAACC-TAATTCTTCATTACCCATAAATAC 562 Query 174 CATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATC 233 ||| |||| || |||||||||||| ||| ||||||||| |||||||| ||||| | | Sbjct 563 CATAGTAGACCCCTATCCTACCATAAAAAATTGATAGGGTAGAAATTTAAATGATGCGTT 622 Query 234 GCCGGCTCAA-GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGG 292 | | || || |||||||| ||| |||||| |||||||| ||| | ||| Sbjct 623 ATCAACATAATGGTCATGCGATCGGTTGAGTTATCATGAATCATCAATGCAATGGGAAAA 682 Query 293 GCGTTGGTT----TTTTATCTAATAAATACACCCCTTCCGAA-GTCGGGGTTTTTAGCAT 347 || ||| ||||||||||||||| || |||||| || ||| ||| | | ||| Sbjct 683 GCCCACGTTAACCTTTTATCTAATAAATTCATCCCTTCTAAAAGTCACGGTATGTTGCAC 742 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA 407 ||||||||||||||| ||| ||| ||||| |||| | | ||| || |||||||| ||| Sbjct 743 GTATTAGCTCTAGAACTACTACGACTATCCGAGTAGCA-GATACCATTAAATAAACTATA 801 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCA 466 ||||||||||||| |||||| ||||||| || | ||| || ||||||| |||| || Sbjct 802 ACTGATTTAATGACCCATTCATAGTTTCATAGTTTGAATTAGTTCATACTTAAACATTCA 861 Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||| ||| || Sbjct 862 TGGCTTAATCTTTGAGACAAGCATATGACTAATGGTAG 899 >seq143472 Length=1090 Score = 194 bits (214), Expect = 5e-47 Identities = 253/342 (74%), Gaps = 15/342 (4%) Strand=Plus/Plus Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||||||| |||||||||||||||| ||||| | |||| ||||||||| | ||| Sbjct 540 CCCGTGTTAGGATTGGGTAATTTGCATGCCTGTTACCTT----GGATGTGGTGATCATTT 595 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||| |||| | ||||||| |||||||||| || | |||| | ||||||| || Sbjct 596 CTCAGGC-CCCTTT--GGAATCGGACCCTAATTCTCCATCACCCATCAATACCATAGTGT 652 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC-T 240 ||| |||| |||||||| |||||||||||| || |||||||||||| | || | || | Sbjct 653 GCCCCTATTCTACCATCAAAAGTTGATAGGACATAAATTTGAATGATGCGTCATCAGCAT 712 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA----AGGAGCCCCGAAGGGCGT 296 | |||||||| || | ||||||||| |||| ||| || | || | | ||| Sbjct 713 AATGGCCATGCAATCCATTAAGTTATCATGATTCATCAGAACAATAGGCAAAACCCACGT 772 Query 297 TGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGC 355 |||| |||||||||| || ||||||| |||| | |||| | |||||| || || Sbjct 773 CAACCTTTTGTCTAATAAATGCATCCCTTCCAAAAGTTGAAGTTTGTTGCATGTGTTGGC 832 Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAA 397 | ||| ||||| ||| |||||| |||| || ||| ||||| Sbjct 833 TGTAG-ATTACTACGATTATCCGAGTAG-CAGATACCATCAA 872 >seq72297 Length=3589 Score = 150 bits (166), Expect = 5e-34 Identities = 199/269 (74%), Gaps = 9/269 (3%) Strand=Plus/Minus Query 82 TTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAA 141 ||| ||| |||||| | ||| || |||| |||||||||||||| ||||||||| | || Sbjct 3462 TTTACGCACCTGCTACTTTCTTTCGATGCAGTAGCCGTTTCTCAAGCTCCCTCTTCAAAA 3403 Query 142 TCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAA 201 |||||||||||||| | | | || ||| ||| ||||||| ||||||||||||| | Sbjct 3402 TCGAACCCTAATTCTCTATCAATTGTCAATATCATAGTAGGCCCCTATCCTACCATC--A 3345 Query 202 AGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA-GGCCATGCGATTCGTTA 260 |||||||| |||| || ||||||||| || |||| ||| ||| || | || || | Sbjct 3344 AGTTGATACGGCAAAATTTTGAATGATGTGTCATCGGCACAACGGCTATACAATCTGTCA 3285 Query 261 AGT--TATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATAC 318 ||| ||| |||||||| ||| ||| || | || | | ||| |||||| ||| | Sbjct 3284 AGTTATATCATGAATCATCAA--AGCAACG-GGTGCATCAGCCTTTCATCTAAATAATGC 3228 Query 319 ACCCCTTCC-GAAGTCGGGGTTTTTAGCA 346 | ||||||| ||||| ||||| | ||| Sbjct 3227 ATCCCTTCCAAAAGTCAAGGTTTGTTGCA 3199 >seq179283 Length=3550 Score = 138 bits (152), Expect = 3e-30 Identities = 284/411 (69%), Gaps = 31/411 (8%) Strand=Plus/Plus Query 78 GTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC 137 ||||||||| | | || || |||||||||||||||||| | |||| |||||| | |||| Sbjct 2684 GTAATTTGCACACATGTTGTCTTCCTTGGATGTGGTAGTCATTTCCCAGGCTTC-TCTCT 2742 Query 138 GGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCAT 197 | |||| |||| |||||| || || ||| | |||| | ||||||| Sbjct 2743 GAAATCAAACCATAATTC-----------TTCAT--CATTTCA--CCACCA--CTACCAT 2785 Query 198 CGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC-TCAAGGCCATGCGATTC 256 ||| ||||||||| | ||||||||||| ||| | ||| | | || | ||| |||| Sbjct 2786 TAAAAATTGATAGGGTAAGAATTTGAATGATACATTGTTGGCATGATGGTCGTGCAATTC 2845 Query 257 GTTAAGTTATTAT--GAATCACCAAGGAGCCCCGAAGGGCGTTGGTTT----TTTATCTA 310 | |||||||||| |||| | || | ||| | ||| | |||||||| Sbjct 2846 ATCAAGTTATTATATGAATTATCATAGCAATAAGAAAAAC-TTGTATCAACCTTTATCTA 2904 Query 311 ATAAATACACCCCTTCCGAAG--TCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCA 368 ||| || || |||| || | |||||| | | || ||||| |||||||||||| | Sbjct 2905 ATAGATGCATTCCTTTTAAAAATTGAGGGTTTGTTGAATATATTAACTCTAGAATTACTA 2964 Query 369 CGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCG 428 |||||| || ||||| || ||| || ||| ||| ||| |||||||||| || |||| Sbjct 2965 TGGTTATTCAAGTAGT-AGATACCATTAAACAAATTATAGCTGATTTAATAAGTCATTTA 3023 Query 429 CAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478 |||||||| | | | | | | ||| || || ||||| ||||||| || Sbjct 3024 TAGTTTCACAATCTAATCTAGTTCATATGTATACTTGCAT-GCTTAATGTT 3073 >seq30811 Length=6836 Score = 93.3 bits (102), Expect = 1e-16 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 82 TTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAA 141 |||| ||||||||| ||||| || |||||||||||||||||||| ||| ||||| | || Sbjct 6755 TTTGTGCGCCTGCTACCTTCTTTCGATGTGGTAGCCGTTTCTCAAGCTTCCTCTTTGAAA 6814 Query 142 TCGAACCCTAATTC 155 |||||||||||||| Sbjct 6815 TCGAACCCTAATTC 6828 >seq172931 Length=10398 Score = 87.8 bits (96), Expect = 5e-15 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 192 TACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC-AAGGCCATG 250 |||||||||||||||||||| ||||||||||||||| | ||| |||| | | || |||| Sbjct 5670 TACCATCGAAAGTTGATAGGACAGAAATTTGAATGATGCGTCGTCGGCACGATGGTCATG 5729 Query 251 CGATTCGTTAAGTTATTATGAATCA 275 | || || ||||||| |||||||| Sbjct 5730 CAATATGTCAAGTTATCATGAATCA 5754 >seq161993 Length=9016 Score = 82.4 bits (90), Expect = 2e-13 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 42 GTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTC 101 || |||||||||||||||| | |||| |||| | ||||||| | || | ||||| Sbjct 3823 GTTTTTATTGTCACTACCTTCTTGTGTTAGGATGTGATAATTTGTCTGTTTGTTACCTTC 3882 Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATT 154 || |||||| ||| | ||||||| |||||| ||| |||| |||||||||| Sbjct 3883 CTGAGATGTGATAGTCATTTCTCACACTCCCTATCCAAAATCAAACCCTAATT 3935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1507221453824