Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq43099 163 3e-35 seq161624 89.7 6e-13 >seq43099 Length=3685 Score = 163 bits (180), Expect = 3e-35 Identities = 260/372 (70%), Gaps = 2/372 (1%) Strand=Plus/Minus Query 162138 CTACC--AAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAG 162195 ||||| |||||||||| |||||||| || ||||||| | | || || || Sbjct 2307 CTACCTGAAGATGGTGATGGTGCAAATACATTTCGGGCTTTTAATCCAACTTAAACTAAG 2248 Query 162196 GAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTT 162255 || ||||| || ||||| | || |||||||| | || | ||||| | ||| |||| Sbjct 2247 GAAACTTATTCAATGGTAATCGCTAACCGTTTTTTATCCTAAATCTTTAGGGTTGTTTTT 2188 Query 162256 AGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACA 162315 ||||| ||||||| ||||||||| || | || || || | | | | |||| Sbjct 2187 TCCAATAAATGTTGGTTACATTTCTTTGTGTTATTGGTACCAATAACCAATTTATGGATG 2128 Query 162316 AGTTCTATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAG 162375 ||| || | || | |||| || ||||| || | |||| || |||| || || || Sbjct 2127 AGTGCTCTTGGAGTAGTTGGTCTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAA 2068 Query 162376 GAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTG 162435 || || | || || ||| |||||||||||||| | ||||||||||| ||||| ||||| Sbjct 2067 GAAATCCATGTAGTGGAAGATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCTTA 2008 Query 162436 AATGAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTC 162495 ||||||||| ||| | | ||| ||||| ||||| || |||| ||| || ||||| Sbjct 2007 AATGAAGGTATTCATACTTGGATGGCAATTCAAGATCAGCCTTATGAAAACCTTATATTC 1948 Query 162496 CCTGAGGAAGTT 162507 ||||||| ||| Sbjct 1947 TCTGAGGAGGTT 1936 >seq161624 Length=13970 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 160136 GGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATAC 160195 |||| |||||||||||| | |||| | |||||| || ||||| ||||||||| Sbjct 9734 GGTCATGAGTGGGAACTTAGATTTTGTCTGGATATGCGCCCTTGGATTGTTGTTGCATAT 9793 Query 160196 TCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCT 160255 || ||| || | | | || ||| ||| ||| | || ||| ||||||| Sbjct 9794 TCAACTCTTGTTGTAGTTACTACTGTTGTTTTCTTGATCAACCTAATCGGTCAATAAAAC 9853 Query 160256 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAA 160315 || || || ||||||||| || | | || |||||| |||| || |||||||||| Sbjct 9854 TTTTCTAATTGTATGCCTCTAGGACTTTTTGATACTTTCAACTTCATAATTGTATTCCAG 9913 Query 160316 GCAGAACACAATATCCTTATGCATCCGTTCCACA 160349 || || ||| ||||||||||| || ||||||| Sbjct 9914 GCTGAGTACATCATCCTTATGCACCCATTCCACA 9947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549925577863200