Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq197702 107 2e-18 seq161624 98.7 1e-15 seq43099 93.3 5e-14 seq18711 86.0 7e-12 seq148340 82.4 9e-11 >seq197702 Length=8019 Score = 107 bits (118), Expect = 2e-18 Identities = 146/199 (73%), Gaps = 10/199 (5%) Strand=Plus/Plus Query 164475 TGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGA--ACAAT--- 164529 |||||| ||||||||| |||| |||| ||| |||| |||||||||||||| || Sbjct 6865 TGTGCTGTTCATGGTGATACCATAGAAAATGCTTTATTTGAAGATGGTGATGGTGATGGT 6924 Query 164530 -CAAATA-CTTTCAAGGCATTCGAGCCT-ACTCAAGAGGAAGAGACTTACTCGATGGTCA 164586 |||||| |||| || ||| | || |||||| |||| ||||| ||||||| Sbjct 6925 GCAAATATATTTC--GGGATTTTAATCTAACTCAAACTAAAGAAACTTATCTAATGGTCA 6982 Query 164587 CTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGC 164646 | | ||| |||| || ||||| |||||||| |||||| |||||| |||||||| | Sbjct 6983 CCACTAACTGCTTTTGATCTCAAATTTTTGGGTTTGCTTCTTCCAATAAACGTTGGTTAC 7042 Query 164647 ACTTCTTTATGCTCTTTGT 164665 | |||||||| | ||||| Sbjct 7043 ATTTCTTTATATTATTTGT 7061 >seq161624 Length=13970 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 160905 GGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGCGTTGCATAT 160964 |||| |||||||||||| | | || | |||||||| ||||| ||||||||| Sbjct 9734 GGTCATGAGTGGGAACTTAGATTTTGTCTGGATATGCGCCCTTGGATTGTTGTTGCATAT 9793 Query 160965 TCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCT 161024 || | | ||||| | | | | || || ||| | || | | |||||||| Sbjct 9794 TCAACTCTTGTTGTAGTTACTACTGTTGTTTTCTTGATCAACCTAATCGGTCAATAAAAC 9853 Query 161025 TTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAG 161084 || ||| || ||||||| || || | | || ||| ||||||||||| |||| |||||| Sbjct 9854 TTTTCTAATTGTATGCCTCTAGGACTTTTTGATACTTTCAACTTCATAATTGTATTCCAG 9913 Query 161085 GCAGAACACAACATCCTGATGCACCCCTTCCACA 161118 || || ||| |||||| |||||||| ||||||| Sbjct 9914 GCTGAGTACATCATCCTTATGCACCCATTCCACA 9947 >seq43099 Length=3685 Score = 93.3 bits (102), Expect = 5e-14 Identities = 213/321 (66%), Gaps = 0/321 (0%) Strand=Plus/Minus Query 164513 TGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGAC 164572 |||||||||||| ||||||| || ||| || | || ||| || | || || Sbjct 2302 TGAAGATGGTGATGGTGCAAATACATTTCGGGCTTTTAATCCAACTTAAACTAAGGAAAC 2243 Query 164573 TTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAA 164632 ||| || ||||| | || ||||| || | || | || ||| | ||| ||| ||| Sbjct 2242 TTATTCAATGGTAATCGCTAACCGTTTTTTATCCTAAATCTTTAGGGTTGTTTTTTCCAA 2183 Query 164633 TAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTC 164692 ||| ||||||| || |||||| || | || || || | | | |||| ||| | Sbjct 2182 TAAATGTTGGTTACATTTCTTTGTGTTATTGGTACCAATAACCAATTTATGGATGAGTGC 2123 Query 164693 TATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGAT 164752 | |||| | | ||||| || || || | |||| ||| | || || || || || || Sbjct 2122 TCTTGGAGTAGTTGGTCTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAAGAAAT 2063 Query 164753 TAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGA 164812 | || || |||||||||||||||| ||||| || || || || ||| | ||||| Sbjct 2062 CCATGTAGTGGAAGATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCTTAAATGA 2003 Query 164813 AGGACTCCGTGCCTGGATGGC 164833 ||| | | | | |||||||| Sbjct 2002 AGGTATTCATACTTGGATGGC 1982 >seq18711 Length=6029 Score = 86.0 bits (94), Expect = 7e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 164461 GTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATG 164520 ||| ||| | || || | |||||||||||||| | | ||| |||| |||||||||| Sbjct 3080 GTGATGCCCAACTATGGGTTATTCATGGTGCTAGTACAAAAAATGCTTTATTTGAAGATG 3139 Query 164521 GTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGA 164580 |||| |||| || || || | || ||| || ||||| ||||| || | Sbjct 3140 GTGATGGTGTAAATGTATTTCGTGCTTTTAATCCAACTTAAACCGAAGAAACTTATTCAA 3199 Query 164581 TGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTT 164640 | ||||| | ||| | |||| |||| | ||||| || ||||||| |||| | ||| Sbjct 3200 TAGTCACCACTAACGGTTTCTTGTCTTAAATTTTGGGGGTTGCTTTTTTCAATTGGTGTT 3259 Query 164641 GGTTGCACTTCTTTATGCTCTTTGT 164665 ||| || ||||||||| | ||||| Sbjct 3260 GGTCACATTTCTTTATGTTATTTGT 3284 >seq148340 Length=1864 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 164460 GGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGAT 164519 |||| ||||| | |||| |||||||||||||| | |||| |||| ||| ||||||||| Sbjct 1126 GGTGAGGCTCTACCATGTGTTATTCATGGTGCTAGCATAGAAAATATTTTATTTGAAGAT 1185 Query 164520 GGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCG 164579 ||| | |||||| || || || | || | ||||| ||||| | ||| | | Sbjct 1186 GGTCATGGTGAAAATACATTTTTTGCTTTTAATCCAAGTCAAGTTGAAGAAATTTATTTG 1245 Query 164580 ATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGT 164639 ||| | || | || || | |||| | || ||||| ||||||| ||| | | | Sbjct 1246 ATGATGACCGTGAATTATTTTTTGTCTTAAATATTTGGGGTTGCTTTTTTCAAAAGACTT 1305 Query 164640 TGGTTGCACTTCTTT 164654 ||||| || |||||| Sbjct 1306 TGGTTACATTTCTTT 1320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557856659729600