Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq3 168 3e-39 seq43 152 2e-34 seq12 120 1e-24 seq57 100 1e-18 >seq3 Length=18779844 Score = 168 bits (186), Expect = 3e-39 Identities = 208/279 (75%), Gaps = 9/279 (3%) Strand=Plus/Minus Query 406 GGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AA 464 |||| |||||| ||||||||||||||||||| |||| ||||||||| || | || Sbjct 18717050 GGCCTGTCTTGAAACACGGACCAAGGAGTCTTACATGTATGCGAGTCAATGAGCCAATAA 18716991 Query 465 ACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCG---TGAGGG-TGCACCATC 519 |||||| | || || ||| ||| ||| || || ||| || ||| ||||| || Sbjct 18716990 ACCCGTAAGGCGCAAGGAAGCTGACCGGCGG---GATCCCCCTTTGCGGGGTGCACAGTC 18716934 Query 520 GACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG 579 | ||| | ||| | | || || || |||| ||||||| || || |||||||||| Sbjct 18716933 AATCGACCTCGATCTTATGAGAAGGGTTCGAGTGAGAGCATGCCTCTTAAGACCCGAAAG 18716874 Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639 |||||||||||||||||| | ||||||||||||||| ||| |||||||| ||||||| Sbjct 18716873 ATGGTGAACTATGCCTGAGCGAGATGAAGCCAGAGGAAATTCTAGTGGAGGCCCGCAGCG 18716814 Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 | || | ||||||||| | ||| | ||||||||||| Sbjct 18716813 ATATTGACATGCAAATCGTTTGTCTGACTTGGGTATAGG 18716775 Score = 120 bits (132), Expect = 1e-24 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 57 AATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGAT 116 |||||||| | || ||| |||||||| | || || |||||||| ||| ||||| |||| Sbjct 18717419 AATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGCTAAATACGGGCAAGAGATCGAT 18717360 Query 117 AGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCAC 176 ||| ||||||| | || ||||||||||||| |||| | ||||||||| ||| ||| | Sbjct 18717359 AGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTCGAAAAGAGAGTCAAAGAGCGC 18717300 Query 177 GTGAAATTGTTGAAAGGGAAG 197 ||||||||| | ||||||| Sbjct 18717299 TTGAAATTGTCGGGAGGGAAG 18717279 >seq43 Length=20304914 Score = 152 bits (168), Expect = 2e-34 Identities = 138/174 (79%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 510 GTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGG 569 |||||||||| ||| | | ||| | | || | || ||| ||||||| |||||| Sbjct 7996600 GTGCACCATCAACCAACCTCGATCTTATGAGAAAGGTTCAAGTGAGAGCATGCCTGTTGA 7996659 Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 7996660 GACCCGAAAAATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 7996719 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || |||| || | || | |||||||| | | | | ||||||||||||| || Sbjct 7996720 GCCCGCAACGATATTGACATGCAAATCTTTTGCCTGACTTGGGTATAGGGGTGA 7996773 Score = 107 bits (118), Expect = 8e-21 Identities = 125/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAAT-GGGAGGTAAATTTCTTCTAAAG 93 || ||||||| ||||||||||||||| | || ||| ||| |||||||||| || || | Sbjct 7996102 TCAACGAGTCAGATTGTTTGGGAATGCAAC-CTCAATCGGGCGGTAAATTTCGTCCAAGG 7996160 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 | ||||| | ||| ||||||||| ||||||| || |||| ||||||| ||| Sbjct 7996161 CAAAATACGAGTGAGAAACCGATAGCAAACAAGTACCACGAGGGAAATATGAAAAAGACT 7996220 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||| ||| ||||| ||| || ||||||||| | ||||||||| Sbjct 7996221 TTGAAAAAAGAGTCAAAGAGTGTTTGAAATTGTCGGGAGGGAAGCG 7996266 >seq12 Length=21026613 Score = 120 bits (132), Expect = 1e-24 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 |||||||||||||||||||||||| |||||||||| | |||| |||||| | |||||||| Sbjct 2080851 CTGTTGGGACCCGAAAGATGGTGATCTATGCCTGAGTGGGGTAAAGCCAAATGAAACTCT 2080792 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 |||||||| | ||| | | || |||||||||| ||||| | ||| ||||| |||| Sbjct 2080791 AGTGGAGGCCCACAGTGATACTAACGTGCAAATCACTCGTCTGACTTGCATATAGCGGCG 2080732 Query 683 A 683 | Sbjct 2080731 A 2080731 >seq57 Length=24021853 Score = 100 bits (110), Expect = 1e-18 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| |||||| |||||||||||||| ||| |||| ||| ||||||| || || || Sbjct 138450 TCGGCGAGTCAGGTTGTTTGGGAATGTAGCCCTAATCGGGCAGTAAATTCAATCCAAGGC 138391 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| || |||||| ||||| ||||||| |||| ||| ||||||| | || Sbjct 138390 GAAATATGGGTAAGAGACTAATAGCAAACAAGTATCGTGAGGAAAAAATGAAAAAGATTT 138331 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 || ||| | ||| ||| || ||||||||| |||| | ||| Sbjct 138330 TGAAAAAAAAGTCAAAGAGTGTTTGAAATTGTCGAAAAGAAAG 138288 Score = 95.1 bits (104), Expect = 5e-17 Identities = 177/255 (69%), Gaps = 10/255 (4%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT--GTC 462 ||||| | ||| ||||| ||||||||||||||| || | ||||||| | || || Sbjct 138065 CGGCCTATTTTGAAACACAGACCAAGGAGTCTAATATGTGTGCGAGTCAATAGGCCAGTA 138006 Query 463 AAACCC-GTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCG 520 ||| || || | | || ||| ||| ||| | || || |||||||||||| Sbjct 138005 AAAACCTGTAAGGCACAAGGAAGTTGATCGGCAG---GATCCTC---GGGTGCACCATCA 137952 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||| | | | || | | || | || |||| ||||||| || | ||| ||||| Sbjct 137951 ACCAACCTTAATCTTATAAGACAGGTTCGAGTGAGAGCATGTCTATCAAAACCTAAAAGA 137892 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||| ||||||| | |||| ||| | ||||||||||| | |||||||| | |||| Sbjct 137891 TGGTGAAGTATGCCTAAGCAGGGCGAAACTAGAGGAAACTCCGATGGAGGCTTGTAGCGA 137832 Query 641 TTCTGGCGTGCAAAT 655 | || | ||||||| Sbjct 137831 TACTAACATGCAAAT 137817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079959094850