Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1906 152 7e-35 seq1907 141 1e-31 seq1 84.2 3e-14 seq6 77.0 5e-12 seq32 75.2 2e-11 >seq1906 Length=773279 Score = 152 bits (168), Expect = 7e-35 Identities = 181/243 (74%), Gaps = 12/243 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 570158 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 570216 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 570217 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 570274 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 570275 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 570325 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | |||| |||||| |||||| || ||||||||||||||| | Sbjct 570326 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 570385 Query 246 GTA 248 ||| Sbjct 570386 GTA 570388 >seq1907 Length=160928 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 111563 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 111505 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 111504 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 111458 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 111457 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 111404 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 111403 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 111344 Query 246 GTA 248 ||| Sbjct 111343 GTA 111341 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 138497 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 138555 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 138556 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 138602 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 138603 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 138656 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 138657 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 138716 Query 246 GTA 248 ||| Sbjct 138717 GTA 138719 >seq1 Length=23037639 Score = 84.2 bits (92), Expect = 3e-14 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 138 AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTC 197 || ||||||||||| | ||||||||| |||| |||||||||| ||||||| | |||| Sbjct 11280621 AGAGGCACCCCTTCGCTCGAAGTTACAGGGCTATTTTGCCGACTTCCTTAGGGAGAGTTG 11280680 Query 198 ACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | | | ||||||||||||| ||| |||||||||||| |||| Sbjct 11280681 TCTTGTGCCTCCAGGTATTCTCTACCTACCCAGCTGTGTCGGTTTCAGGTA 11280731 Score = 78.8 bits (86), Expect = 1e-12 Identities = 76/98 (78%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 144 ACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGA 203 ||||||||||| ||||||||||| | |||||| | | ||| ||| | |||| | | Sbjct 22949770 ACCCCTTCTCCAGAAGTTACGGGACTATTTTGTCAAGTTCTTTAGAGAGAGTTGTCTCAC 22949711 Query 204 ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 || ||| ||||||||||||| |||||| |||||||| Sbjct 22949710 ACCCCTAAGTATTCTCTACCCACCCACCTATGTCGGTT 22949673 >seq6 Length=23867706 Score = 77.0 bits (84), Expect = 5e-12 Identities = 78/102 (76%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||| ||||||| ||| |||||| | | ||||||| | |||| | Sbjct 20424042 GGCACCCCTTCTCCCAAAGTTACAAGGCTATTTTGTCAAGTTCCTTAGAAAGAGTTATCT 20424101 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | | ||| |||||||||||| ||||||| |||||||| Sbjct 20424102 CATGCCCCTAGATATTCTCTACCTACCCACCTGAGTCGGTTT 20424143 >seq32 Length=19818926 Score = 75.2 bits (82), Expect = 2e-11 Identities = 81/106 (76%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 143 CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCG 202 ||||| |||||| |||||||||||| |||| | ||| ||| ||| | |||| | || Sbjct 10259316 CACCCTTTCTCCTAAAGTTACGGGGCTATTT-GTCGAGTTCTTTAGAGAGAGTTGTCTCG 10259374 Query 203 AACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | ||| ||||||||||||| |||||||||||| ||| |||| Sbjct 10259375 CATCCCTAGGTATTCTCTACCTACCCACCTGTGTCGATTTCAGGTA 10259420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694387171611