Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1907 269 7e-70 seq1906 248 2e-63 seq6 145 2e-32 seq32 107 5e-21 seq35 104 6e-20 seq57 102 2e-19 seq23 84.2 6e-14 seq44 77.0 8e-12 >seq1907 Length=160928 Score = 269 bits (298), Expect = 7e-70 Identities = 308/418 (74%), Gaps = 27/418 (6%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 111753 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 111694 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 111693 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 111634 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 111633 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 111574 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 111573 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 111514 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 111513 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 111460 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||||||||||||||| || || Sbjct 111459 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 111417 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 111416 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 111359 Score = 269 bits (298), Expect = 7e-70 Identities = 308/418 (74%), Gaps = 27/418 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 138307 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 138366 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 138367 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 138426 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 138427 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 138486 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 138487 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 138546 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 138547 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 138600 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||||||||||||||| || || Sbjct 138601 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 138643 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 138644 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 138701 >seq1906 Length=773279 Score = 248 bits (274), Expect = 2e-63 Identities = 302/412 (73%), Gaps = 21/412 (5%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 569972 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 570031 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 570032 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 570091 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||||||| || | ||||| || | || Sbjct 570092 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT----ATAAC--AC 570145 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | ||||||| |||||||||||| |||| || |||||| || || | | Sbjct 570146 TTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 570205 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| ||||||||||||||||||||||| | |||||||| | | | | | Sbjct 570206 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 570265 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | | || || |||| ||||||||||||||||||| | | Sbjct 570266 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCA 570310 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 ||||||| ||||||||| | ||||||||||||||| | |||| |||||| Sbjct 570311 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 570362 >seq6 Length=23867706 Score = 145 bits (160), Expect = 2e-32 Identities = 284/420 (68%), Gaps = 31/420 (7%) Strand=Plus/Plus Query 14 CATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTA 73 ||||||||||| || || ||||||| || ||| ||| ||| ||| ||||||| Sbjct 20423736 CATCTTCACAGACATGTCTATTTCACCAAGCCTCTCTCTGAGGCAGTGCCCAGATCGTTA 20423795 Query 74 CGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 133 |||| ||||||| |||| |||||||||| ||||| ||||||||||||||||||||||||| Sbjct 20423796 CGCCTTTCGTGCGGGTCAGAACTTACCCAACAAGTAATTTCGCTACCTTAGGACCGTTAT 20423855 Query 134 TGTTACGGCCGCCGTTTACCGGGGCTTCGATC----AAGAGCTTCGCGTTAGCTAACCCC 189 |||||| |||||||| | | |||||| | || | ||| | ||| | | | Sbjct 20423856 AGTTACGACCGCCGTTCATCAGGGCTTTGGTCGCCGACTCCCTTGTCACTAGATTAGCAA 20423915 Query 190 ATCAATTAACCTTCCGGCAC--CGGGCAGGCGTCA-CACCCTATACGTCCACTTTCGTGT 246 | || ||||| |||||| || ||||| || ||| | ||| | ||| || | Sbjct 20423916 CTTTCTTGACCTTTCGGCACTTTAGGTAGGCGACAGCACTC-ATATATGGTCTTACGACT 20423974 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 ||| ||| || ||||||| ||||||| ||| ||| | || || ||||| Sbjct 20423975 TTGTGGAGACCTATGTTTTTTATAAACAATCGTCCGGGCTTAGTCACTGCGACC------ 20424028 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 ||| ||| | ||| | ||||||||| ||||||| || Sbjct 20424029 CCCTTTGAGAGAA-----------------GGCACCCCTTCTCCCAAAGTTACAAGGCTA 20424071 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| | |||||||| ||||| ||||| || ||| | ||||||||||| | |||| Sbjct 20424072 TTTTGTCAAGTTCCTTAGAAAGAGTTATCTCATGCCCCTAGATATTCTCTACCTACCCAC 20424131 >seq32 Length=19818926 Score = 107 bits (118), Expect = 5e-21 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 14 CATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTA 73 |||||||||| || | ||||||| ||| || ||||||| || ||||||| Sbjct 10259032 CATCTTCACAAACATCTTTATTTCACCGAGCCTTTCTCTGAGACAGTGCTCAGATCGTTA 10259091 Query 74 CGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 133 ||| || |||| |||| |||||||||||||||||||||| ||||| ||||||||||||| Sbjct 10259092 TGCCTTTTGTGCGGGTCAGAACTTACCCGACAAGGAATTTTGCTACTTTAGGACCGTTAT 10259151 Query 134 TGTTACG 140 |||||| Sbjct 10259152 AGTTACG 10259158 >seq35 Length=22702307 Score = 104 bits (114), Expect = 6e-20 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 16 TCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACG 75 |||||| || || || ||||||| | ||| ||||| | ||| || ||||| Sbjct 14586849 TCTTCATAGACATGTCTATTTCACCAAACCTCTCTCTGAGACGGTGCCTAGATTGTTACT 14586908 Query 76 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTG 135 || ||| ||||||| |||||| || |||||||||||| |||||||||||| |||||| | Sbjct 14586909 CCTTTCATGCAGGTTGGAACTAACATGACAAGGAATTTTGCTACCTTAGGATCGTTATAG 14586968 Query 136 TTACGGCCGCCGTTTACCGGGGCTT 160 ||| | |||| ||| || ||||||| Sbjct 14586969 TTATGACCGCTGTTCACTGGGGCTT 14586993 Score = 98.7 bits (108), Expect = 3e-18 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 16 TCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACG 75 ||||||||| || || ||||||| | ||| | |||| || ||| || ||| | Sbjct 14648099 TCTTCACAGACATGTCTATTTCACCAAACCTCTTTTCGAGATAGTGCCCAAATTGTTCTG 14648040 Query 76 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTG 135 || |||||| ||| | ||||| | |||||||||||| |||||||||||| ||||| | Sbjct 14648039 CCTTTCGTGTGGGTTGAAACTTGCTTGACAAGGAATTTTGCTACCTTAGGATTGTTATAG 14647980 Query 136 TTACGGCCGCCGTTTACCGGGGCTTCG 162 ||| | | | |||| |||||||||||| Sbjct 14647979 TTATGACTGTCGTTCACCGGGGCTTCG 14647953 >seq57 Length=24021853 Score = 102 bits (112), Expect = 2e-19 Identities = 116/155 (75%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 ||||||||||||| || | ||||||| || ||| ||| | ||| |||| Sbjct 1624645 CTGCATCTTCACAAACATATTTATTTCACCAAGCCTCTCCA--AGATATTGCCTAAATCG 1624588 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 ||||| | ||| |||||||| | ||||| | |||||||||||| ||||||||| ||||| Sbjct 1624587 TTACGTCTTTCATGCAGGTCAAAGCTTACTCAACAAGGAATTTCACTACCTTAGAACCGT 1624528 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 ||| |||| ||| || |||||| | |||||| || Sbjct 1624527 TATAATTACAGCCACCATTTACCAGAGCTTCGGTC 1624493 >seq23 Length=22385789 Score = 84.2 bits (92), Expect = 6e-14 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 103 ACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCG 162 || |||||||||||||||||||||| | || ||||| ||||||||||||||||||||| Sbjct 10715783 ACTAGGAATTTCGCTACCTTAGGACAGGTAGAGTTACTGCCGCCGTTTACCGGGGCTTCC 10715724 Query 163 ATCAAGAGCTT 173 || | ||||| Sbjct 10715723 ATTCAAAGCTT 10715713 >seq44 Length=22053297 Score = 77.0 bits (84), Expect = 8e-12 Identities = 83/109 (76%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 67 ATCGTTACGCCATT-CGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 125 ||| ||||||| || ||||| ||| ||||||||| ||||| |||||| |||||||||| Sbjct 4241851 ATCATTACGCCTTTTCGTGCGGGTTGGAACTTACTTGACAACGAATTTTACTACCTTAGG 4241792 Query 126 ACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC 174 | ||| | ||||| | ||| || | | |||||| |||| | |||| Sbjct 4241791 ATTGTTGTAGTTACAACTGCCATTCATCAAGGCTTCAATCACCAACTTC 4241743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260775956544