Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq1907 338 1e-90 seq1906 273 5e-71 seq6 232 1e-58 seq32 172 1e-40 seq35 165 2e-38 seq57 118 2e-24 seq1 105 1e-20 seq44 104 5e-20 seq23 86.0 1e-14 seq9 80.6 6e-13 >seq1907 Length=160928 Score = 338 bits (374), Expect = 1e-90 Identities = 289/353 (82%), Gaps = 8/353 (2%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 111753 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 111694 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 111693 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 111634 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 111633 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 111574 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 111573 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 111514 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCA 299 || || ||||||||||||||||||||||||| |||||| || ||||| ||| | Sbjct 111513 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 111454 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 111453 GAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 111402 Score = 338 bits (374), Expect = 1e-90 Identities = 289/353 (82%), Gaps = 8/353 (2%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 138307 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 138366 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 138367 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 138426 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 138427 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 138486 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 138487 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 138546 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCA 299 || || ||||||||||||||||||||||||| |||||| || ||||| ||| | Sbjct 138547 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 138606 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 138607 GAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 138658 >seq1906 Length=773279 Score = 273 bits (302), Expect = 5e-71 Identities = 286/376 (76%), Gaps = 20/376 (5%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 569972 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 570031 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 570032 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 570091 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| ||||||| |||| ||| | |||| Sbjct 570092 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATAAC 570143 Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || |||| |||||||||||||||||||| ||||| ||||||||||| || | | Sbjct 570144 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 570203 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 570204 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 570263 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 570264 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 570323 Query 349 CTTAACAATAGTTCTC 364 ||| || |||||| Sbjct 570324 CTTCGACATGGTTCTC 570339 >seq6 Length=23867706 Score = 232 bits (256), Expect = 1e-58 Identities = 275/367 (75%), Gaps = 12/367 (3%) Strand=Plus/Plus Query 8 CATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTA 67 ||||||||| | || | |||||||| || || | |||| ||||||||| ||||||| Sbjct 20423736 CATCTTCACAGACATGTCTATTTCACCAAGCCTCTCTCTGAGGCAGTGCCCAGATCGTTA 20423795 Query 68 CGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 127 ||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||| Sbjct 20423796 CGCCTTTCGTGCGGGTCAGAACTTACCCAACAAGTAATTTCGCTACCTTAGGACCGTTAT 20423855 Query 128 AGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTG-CTCTA----ACAG 182 ||||||| |||||||| | |||||| | || | | || ||| | ||| | Sbjct 20423856 AGTTACGACCGCCGTTCATCAGGGCTT-TGGTCGCCGACTCCCTTGTCACTAGATTAGCA 20423914 Query 183 ATCCCCTTAACCTTCCAGCAC--CGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | ||| ||||| | |||| || ||||| |||| | ||| || ||||| ||||| Sbjct 20423915 ACTTTCTTGACCTTTCGGCACTTTAGGTAGGCGACAGCACTCATATATGGTCTTACGACT 20423974 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGT 297 | | || |||| ||||||| |||||| ||| |||| || || ||||| ||| | Sbjct 20423975 TTGTGGAGACCTATGTTTTTTATAAACAATCGTCCGGGCTTAGTCACTGCGACCCCCTTT 20424034 Query 298 CATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAAT 357 | ||| |||||||||||||||| ||||||| || |||||| | ||||||||| || Sbjct 20424035 GAGAGA-AGGCACCCCTTCTCCCAAAGTTACAAGGCTATTTTGTCAAGTTCCTTAGAAAG 20424093 Query 358 AGTTCTC 364 |||| || Sbjct 20424094 AGTTATC 20424100 >seq32 Length=19818926 Score = 172 bits (190), Expect = 1e-40 Identities = 240/329 (73%), Gaps = 23/329 (7%) Strand=Plus/Plus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 ||||||||||| || | ||||||||||| || ||||||| |||||| ||||||||| | Sbjct 10259051 ATTTCACCGAGCCTTTCTCTGAGACAGTGCTCAGATCGTTATGCCTTTTGTGCGGGTCAG 10259110 Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTAC 146 ||||||||||||||||||||| ||||| |||||||||||||||||||| | || | | Sbjct 10259111 AACTTACCCGACAAGGAATTTTGCTACTTTAGGACCGTTATAGTTACGATCACCAGCT-C 10259169 Query 147 TGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCGG 206 | |||| ||| | | |||| || | |||| |||||| ||| | Sbjct 10259170 T----CTTA---TCA----TAAGGTTGC-----CA-ACTTCCTTGACCTTCTGGCATTAG 10259212 Query 207 GCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAA 266 ||| |||| ||| | |||||| ||||| ||| || | || |||| | ||||| ||||| Sbjct 10259213 GCAAGCGTTAGCCTCCATACATGGTCTTACGATTTTTCTGAGACCTTTATTTTTAGTAAA 10259272 Query 267 CAGTCGCTTGGGCCTATTCTCTGCGGCC---TGTCATAGACAGGCACCCCTTCTCCCTAA 323 || | ||| | |||| || |||| || | | ||| || ||||| |||||| || Sbjct 10259273 CAATTGCTCGAGCCTGGTCACTGCAACCCCTTTTGTGAGA-AGACACCCTTTCTCCTAAA 10259331 Query 324 GTTACGGGGTCATTTTGCCGAGTTCCTTA 352 ||||||||| | |||| ||||||| ||| Sbjct 10259332 GTTACGGGG-CTATTTGTCGAGTTCTTTA 10259359 >seq35 Length=22702307 Score = 165 bits (182), Expect = 2e-38 Identities = 222/306 (73%), Gaps = 5/306 (2%) Strand=Plus/Plus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 |||||||| | || | |||||| ||||| | || ||||| |||||| ||| ||| || Sbjct 14586866 ATTTCACCAAACCTCTCTCTGAGACGGTGCCTAGATTGTTACTCCTTTCATGCAGGTTGG 14586925 Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTAC 146 |||| || |||||||||||| |||||||||||| ||||||||||| | |||| ||| || Sbjct 14586926 AACTAACATGACAAGGAATTTTGCTACCTTAGGATCGTTATAGTTATGACCGCTGTTCAC 14586985 Query 147 TGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAGATCCCCTTAACCTTCCAGCA 202 |||||||| || | ||| | | | || | || | |||| ||||| |||| Sbjct 14586986 TGGGGCTTTGGTAGCCAGCTCCCTTGTCATCAAGTCACCAACTTCCTTGACCTTTTAGCA 14587045 Query 203 CCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGG 262 || ||| |||| | || |||||| ||||| | |||| | | || | ||||||||| Sbjct 14587046 TTAGGTAGGTGTCAACCCCCATACATGGTCTTACAACTTTGTCAATACTTATGTTTTTGG 14587105 Query 263 TAAACAGTCGCTTGGGCCTATTCTCTGCG-GCCTGTCATAGACAGGCACCCCTTCTCCCT 321 |||||||| || ||||| || || || || | || | ||| |||||||||||| Sbjct 14587106 TAAACAGTTGCCCAAGCCTAGTCACTACGTCCCCTTTATGGGGAGGTACCCCTTCTCCCA 14587165 Query 322 AAGTTA 327 |||||| Sbjct 14587166 AAGTTA 14587171 Score = 163 bits (180), Expect = 6e-38 Identities = 232/323 (72%), Gaps = 5/323 (2%) Strand=Plus/Minus Query 10 TCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACG 69 ||||||| | || | |||||||| | || || | |||| ||||||||||| ||| | Sbjct 14648099 TCTTCACAGACATGTCTATTTCACCAAACCTCTTTTCGAGATAGTGCCCAAATTGTTCTG 14648040 Query 70 CCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAG 129 ||||||||| |||| | ||||| | |||||||||||| |||||||||||| ||||||| Sbjct 14648039 CCTTTCGTGTGGGTTGAAACTTGCTTGACAAGGAATTTTGCTACCTTAGGATTGTTATAG 14647980 Query 130 TTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAGATC 185 ||| | | | |||| || ||||||| || ||| | | | || | || | Sbjct 14647979 TTATGACTGTCGTTCACCGGGGCTTCGGTAGCTAGCTCCCCTGTCATCAAGTCACCAACT 14647920 Query 186 CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCA 245 |||| ||||| || ||| || |||||||| || |||||| ||||| | |||| | Sbjct 14647919 TCCTTGACCTTTCAACACTAGGTAGGCGTCAATCCCCATACATGGTCTTACAACTTTGTG 14647860 Query 246 GAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG-GCCTGTCATAGAC 304 || || | ||||||||||||| ||| || ||||| || || | || | || | Sbjct 14647859 GATACTTATGTTTTTGGTAAATAGTTGCCCAGGCCTGGTCATTGTGACCCCTTTATGGGG 14647800 Query 305 AGGCACCCCTTCTCCCTAAGTTA 327 |||||||||||||||| |||||| Sbjct 14647799 AGGCACCCCTTCTCCCAAAGTTA 14647777 >seq57 Length=24021853 Score = 118 bits (130), Expect = 2e-24 Identities = 193/273 (71%), Gaps = 9/273 (3%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 || || |||||||||| || |||||||| || || | ||| | |||| || Sbjct 1624649 TAGCCTGCATCTTCACAAACATATTTATTTCACCAAGCCTCTCCA--AGATATTGCCTAA 1624592 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||||| ||||| ||| |||| | ||||| | |||||||||||| ||||||||| | Sbjct 1624591 ATCGTTACGTCTTTCATGCAGGTCAAAGCTTACTCAACAAGGAATTTCACTACCTTAGAA 1624532 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGT--TCACTGCTTCGAT--TGCTC 176 |||||||| |||| ||| || ||||| | |||| || ||| | | | | | Sbjct 1624531 CCGTTATAATTACAGCCACCATTTACCAGAGCTTCGGTCGTCAATTCCCCTGTCATCAAG 1624472 Query 177 TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCG--TCAGCTCCTATACATCGTCTT 234 | || | |||| ||||| || ||||| ||| ||||| || ||| || | ||| Sbjct 1624471 TCACCAACTTCCTTGACCTTTTGACAATGGGCAAGCGTATCAGC-CCCATATATGGCCTT 1624413 Query 235 GCGACTTAGCAGAAACCTGTGTTTTTGGTAAAC 267 ||||| ||||| |||| |||||||||||||| Sbjct 1624412 ATGACTTTGCAGAGACCTATGTTTTTGGTAAAC 1624380 >seq1 Length=23037639 Score = 105 bits (116), Expect = 1e-20 Identities = 106/136 (78%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 220 CCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGC 279 ||||||||| ||||| | | || || || | ||||||||||||||||||||||||||||| Sbjct 11280536 CCTATACATGGTCTTACAATTTTGCGGAGAACTGTGTTTTTGGTAAACAGTCGCTTGGGC 11280595 Query 280 CTATTCTCTGCGGCCTGTCATAG---ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCAT 336 | || ||| | || | | | | |||||||||||| | | ||||||| ||| || Sbjct 11280596 AT-GTCACTGGGACCCCCCTTTGTGAAGAGGCACCCCTTCGCTCGAAGTTACAGGGCTAT 11280654 Query 337 TTTGCCGAGTTCCTTA 352 |||||||| ||||||| Sbjct 11280655 TTTGCCGACTTCCTTA 11280670 >seq44 Length=22053297 Score = 104 bits (114), Expect = 5e-20 Identities = 207/300 (69%), Gaps = 10/300 (3%) Strand=Plus/Minus Query 61 ATCGTTACGCCTTT-CGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 119 ||| |||||||||| ||||||||| ||||||||| ||||| |||||| |||||||||| Sbjct 4241851 ATCATTACGCCTTTTCGTGCGGGTTGGAACTTACTTGACAACGAATTTTACTACCTTAGG 4241792 Query 120 ACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC-- 176 | ||| ||||||| | ||| || | ||||| | | | |||| | | || Sbjct 4241791 ATTGTTGTAGTTACAACTGCCATTCATCAAGGCTTCAATCACCAACTTCTCTATCATCAG 4241732 Query 177 -TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTG 235 | || | | |||||||||| | | | ||| | | ||| |||||| || |||| Sbjct 4241731 GTCACCAACCTCCTTAACCTTTCGCTAAGGAGCAAACATTAGCCCCTATATATGATCTTA 4241672 Query 236 CGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTG---CGG 292 | |||| ||||| || ||| ||||||||||| ||| | || || || || || | Sbjct 4241671 CAACTTTGCAGAGACATGTATTTTTGGTAAATAGTTGTTTAGGTCTGGTCATTGTGACTC 4241612 Query 293 CCTGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 ||| | || ||||||| ||| | || ||||||| | ||||| ||||||| ||| Sbjct 4241611 CCTTTGTGAG-GAGGCACCTCTT-TACCAAAGTTACAAGACTATTTTATCGAGTTCATTA 4241554 >seq23 Length=22385789 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/117 (76%), Gaps = 10/117 (9%) Strand=Plus/Minus Query 97 ACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAA 156 || |||||||||||||||||||||| | || |||||| |||||||||||| ||||||| Sbjct 10715783 ACTAGGAATTTCGCTACCTTAGGACAGGTAGAGTTACTGCCGCCGTTTACCGGGGCTTCC 10715724 Query 157 GTTCACTGCTTCGATTGCTCTAACAGATCCCCTT--AACCTTCCAGCACCGGGCAGG 211 |||| ||| | ||||| || |||| |||||| ||||||||| ||| Sbjct 10715723 ATTCAAAGCT--------TATAACACTTCTCCTTCCGACCTTCTAGCACCGGGGAGG 10715675 >seq9 Length=25021643 Score = 80.6 bits (88), Expect = 6e-13 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 46 TGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAAT 105 ||||| ||| || ||| ||| || |||| || |||| |||||||| | |||||||| Sbjct 15267958 TGAGATGGTGGTCAGATCATTATGCTTTTCATGTGGGTTAGAACTTACATGGCAAGGAAT 15268017 Query 106 TTCGCTACCTTAGGACCGTTATAGTTA 132 || |||||||||||||||||||| ||| Sbjct 15268018 TTTGCTACCTTAGGACCGTTATAATTA 15268044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062379740032