Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq585 232 1e-58 seq43 140 5e-31 seq11 140 5e-31 seq26 104 4e-20 seq37 91.5 2e-16 seq32 89.7 8e-16 seq41 87.8 3e-15 seq39 84.2 3e-14 seq51 73.4 6e-11 >seq585 Length=104249 Score = 232 bits (256), Expect = 1e-58 Identities = 184/217 (85%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 47 TAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTC 104 ||||||||||||||||||||||||||||||||||||| | | || |||| | |||||| Sbjct 100557 TAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTC 100614 Query 105 CCTCTAAGAAGCCAGCCACCAAC---CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTC 161 |||||||||||| || | | || || | |||| |||||||| | ||||| Sbjct 100615 CCTCTAAGAAGCTGGCTGCGGAGGCTCACCTTC-ACATAGCTAGTTAGCAGGCTGAGGTC 100673 Query 162 TCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACC 221 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 100674 TCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACC 100733 Query 222 ACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||| ||| |||||| Sbjct 100734 ACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC 100770 >seq43 Length=20304914 Score = 140 bits (154), Expect = 5e-31 Identities = 100/115 (87%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| ||| |||||| ||||||||||||||| | |||||||||||| |||| ||||||| Sbjct 3023071 GCTAGTTAACAGGTTGAGGTCTCGTTCGTTAACAGAATTAACCAGATAAATTGCTCCACC 3023130 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 ||||||||| | |||||||||||||||||||||||| ||||||| ||||||| Sbjct 3023131 AACTAAGAATGACCATGCACCACCACCCATAGAATC----AAGAGCTCTCAATCT 3023181 >seq11 Length=21508407 Score = 140 bits (154), Expect = 5e-31 Identities = 144/188 (77%), Gaps = 24/188 (13%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||| |||| ||||| ||||||||||||||||||||||| || |||||||||||| Sbjct 15611663 TCAGTGTAGTGCGCATGCGGTCCAGAACATCTAAGGGCATCACAAACTTGTTATTGCCTC 15611604 Query 76 AAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAGC----------CAC 123 |||||||| | | || |||| | ||| |||||||||||||| || ||| Sbjct 15611603 AAACTTCCTTGGCCT--AAGCGGCCATAATCCCTCTAAGAAGCTGGCTGTGGAGGCTCAC 15611546 Query 124 CAAC-CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAAC 182 | | |||| |||| |||||||| | || |||| ||||||| |||||||||| Sbjct 15611545 CTTCACATA---------GCTAGTTAGCAGGCTGAGATCTCATTCGTTAACGGAATTAAC 15611495 Query 183 CAGACAAA 190 |||||||| Sbjct 15611494 CAGACAAA 15611487 Score = 122 bits (134), Expect = 1e-25 Identities = 93/110 (85%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| ||||| |||||| |||| |||||||||||| |||||| || ||||| Sbjct 16634780 CTAGTTAGCAGGCTAAGGCCTCGTTTGTTAACGGAATTAACCAAACAAATTGCTTCACCA 16634721 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 ||||| | || |||| || |||||||||||||||||||||||| | ||| Sbjct 16634720 ACTAAAAGTGGTCATGTACTACCACCCATAGAATCAAGAAAGAGTTTTCA 16634671 >seq26 Length=18140952 Score = 104 bits (114), Expect = 4e-20 Identities = 96/120 (80%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | | |||||||| || ||| | |||||||||||||||||||||||| | Sbjct 14763010 ACTCGTTGAATACATTAGTGTAGCACGTGTGTGACCCAGAACATCTAAGGGCATCACAAA 14762951 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 | ||||||| |||||| |||| | | || |||| | |||||||||||||||||| || Sbjct 14762950 CTTGTTATTCCCTCAATTTTCCTTAGCCT--AAGCGGCTATAGTCCCTCTAAGAAGCTAG 14762893 >seq37 Length=24396255 Score = 91.5 bits (100), Expect = 2e-16 Identities = 87/109 (80%), Gaps = 3/109 (3%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||||| | |||||| ||| ||||| ||| ||||||||| ||||| | || |||| Sbjct 23654699 TCAATGTAGCATGTGTGCGGTCCAAAACATGTAAAGGCATCACAAACCTGATCTTACCTC 23654640 Query 76 AAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGCCAGCCAC 123 |||||| |||| || ||| | | ||||||||||||||||| ||||| Sbjct 23654639 AAACTTTCATT--CTTGAACCACCATAGTCCCTCTAAGAAGTTGGCCAC 23654593 Score = 75.2 bits (82), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 5/121 (4%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | | |||||| ||| | || | | | ||||||||||||||||||| | Sbjct 16979667 ACTCGTTGCATACATTAGTGTAACGCACATGTGTCTAA-AACATCTAAGGGCATCACAAA 16979609 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA--ATAGTCCCTCTAAGAAGCCAG 119 ||| |||| |||||||||| | | | || ||| | || ||||||||||||||| || Sbjct 16979608 CCTATTATCACCTCAAACTTTCTTGGCCT--AAGTGATCATGGTCCCTCTAAGAAGCTAG 16979551 Query 120 C 120 | Sbjct 16979550 C 16979550 >seq32 Length=19818926 Score = 89.7 bits (98), Expect = 8e-16 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||| |||| | | | ||||| ||| |||||||||| |||||| ||| Sbjct 6550414 ACTCGTTGAATACATCAATGTAACACACATGCGGTCCAAAACATCTAAGAGCATCATAGA 6550473 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||| |||||||||| |||| | || | |||||||||||||||||| ||| Sbjct 6550474 CCTGTTGTTGCCTCAAATTTCCTTATCCTAAATTGTCATAGTCCCTCTAAGAAGCTAGCT 6550533 Query 122 AC 123 || Sbjct 6550534 AC 6550535 >seq41 Length=1300385 Score = 87.8 bits (96), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 5/116 (4%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | | ||||||||| || || | |||| |||||||||||||||| ||| Sbjct 705025 ACTCGTTGAATACATTAGTGTAGCGTGCATGTG-CCCAAAACATCTAAGGGCATCGTAGA 704967 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA--ATAGTCCCTCTAAGAAG 115 | | |||||||||||||||||| | | || ||| | || |||||||||||||| Sbjct 704966 CGTATTATTGCCTCAAACTTCCTTGGCCT--AAGTGATCATGGTCCCTCTAAGAAG 704913 Score = 84.2 bits (92), Expect = 3e-14 Identities = 93/121 (77%), Gaps = 5/121 (4%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | | |||||| ||| | || | | | ||||||||| ||||||||||| Sbjct 821803 ACTCGTTGAATACATTAGTGTAACGCACATGTG-CTTAAAACATCTAATGGCATCACAGA 821745 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA--ATAGTCCCTCTAAGAAGCCAG 119 ||| |||| |||||||||||| | | || |||| | || ||||||||||||||| || Sbjct 821744 CCTATTATCACCTCAAACTTCCTTGGCCT--AAGCGATCATGGTCCCTCTAAGAAGCTAG 821687 Query 120 C 120 | Sbjct 821686 C 821686 Score = 82.4 bits (90), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 79 |||| ||| | || | || | |||||||||||||||||||||| | |||| |||||||| Sbjct 600143 TGTAACGCACATGTG-CCTAAAACATCTAAGGGCATCACAGACATATTATCACCTCAAAC 600085 Query 80 TTCCATTGGCTGGAAGCCAATA--GTCCCTCTAAGAAGCCAGC 120 |||| | | || |||| | || ||||||||||||||| ||| Sbjct 600084 TTCCCTGGCCT--AAGCGATTATGGTCCCTCTAAGAAGCTAGC 600044 Score = 78.8 bits (86), Expect = 1e-12 Identities = 81/103 (79%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 79 |||| ||| |||| | || | ||||||||||||||||||| || | |||| ||| |||| Sbjct 509266 TGTAACGCACGTGTG-CCTAAAACATCTAAGGGCATCACAAACATATTATCACCTTAAAC 509208 Query 80 TTCCATTGGCTGGAAGCCA--ATAGTCCCTCTAAGAAGCCAGC 120 |||| | | || |||| | || ||||||||||||||| ||| Sbjct 509207 TTCCTTGGCCT--AAGCGATCATGGTCCCTCTAAGAAGCTAGC 509167 Score = 78.8 bits (86), Expect = 1e-12 Identities = 93/121 (77%), Gaps = 5/121 (4%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | | |||||| ||| | || | | | ||||||||| ||||||||||| Sbjct 731132 ACTCGTTGAATACATTAGTGTAACGCACATGTG-CTTAAAACATCTAAAGGCATCACAGA 731074 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA--ATAGTCCCTCTAAGAAGCCAG 119 ||| |||| |||||||||||| ||||| |||| | || |||||| |||||||| || Sbjct 731073 CCTATTATCACCTCAAACTTCC-TTGGC-CTAAGCGATCATGGTCCCTTTAAGAAGCTAG 731016 Query 120 C 120 | Sbjct 731015 C 731015 >seq39 Length=212746 Score = 84.2 bits (92), Expect = 3e-14 Identities = 94/121 (78%), Gaps = 5/121 (4%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | | |||||| ||| || | || | ||||||||| ||||||||||| Sbjct 38839 ACTCGTTGAATACATTAGTGTAACGCATATGTG-CCTAAAACATCTAATGGCATCACAGA 38897 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA--ATAGTCCCTCTAAGAAGCCAG 119 ||| |||| |||||||||| ||||||| |||| | || ||||||||||||||| || Sbjct 38898 CCTATTATCACCTCAAACTT-CATTGGC-CTAAGCGATCATGGTCCCTCTAAGAAGCTAG 38955 Query 120 C 120 | Sbjct 38956 C 38956 Score = 82.4 bits (90), Expect = 1e-13 Identities = 83/103 (81%), Gaps = 5/103 (5%) Strand=Plus/Plus Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 79 |||| ||| |||| | || | |||||||||||||||||||||| | |||| ||| |||| Sbjct 6095 TGTAACGCACGTGTG-CCTAAAACATCTAAGGGCATCACAGACATATTATCACCTTAAAC 6153 Query 80 TTCCATTGGCTGGAAGCCA--ATAGTCCCTCTAAGAAGCCAGC 120 |||| ||||| |||| | || ||||||||||||||| ||| Sbjct 6154 TTCC-TTGGC-CTAAGCGATCATGGTCCCTCTAAGAAGCTAGC 6194 Score = 78.8 bits (86), Expect = 1e-12 Identities = 93/121 (77%), Gaps = 5/121 (4%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | | |||||| ||| | || | || | ||||||||| ||||||||||| Sbjct 112840 ACTCGTTGAATACATTAGTGTAACGCACATGTG-CCTAAAACATCTAAAGGCATCACAGA 112898 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA--ATAGTCCCTCTAAGAAGCCAG 119 ||| |||| |||||||||| | ||||| |||| | || |||||| |||||||| || Sbjct 112899 CCTATTATCACCTCAAACTT-CTTTGGC-CTAAGCGATCATGGTCCCTTTAAGAAGCTAG 112956 Query 120 C 120 | Sbjct 112957 C 112957 >seq51 Length=29360087 Score = 73.4 bits (80), Expect = 6e-11 Identities = 70/88 (80%), Gaps = 4/88 (5%) Strand=Plus/Plus Query 35 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAA 94 ||| | ||||| |||||||||||||||| | |||| |||||||||||| | | || || Sbjct 24529162 GCCTAAAACATATAAGGGCATCACAGACATATTATCACCTCAAACTTCCCTGGCCT--AA 24529219 Query 95 GCCA--ATAGTCCCTCTAAGAAGCCAGC 120 || | || |||||||||| |||| ||| Sbjct 24529220 GCGATCATGGTCCCTCTAACAAGCTAGC 24529247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796785279867