Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq3 340 3e-91 seq49 123 4e-26 seq23 93.3 7e-17 >seq3 Length=18779844 Score = 340 bits (376), Expect = 3e-91 Identities = 252/293 (86%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || |||||||||||| |||||||||||||||||| Sbjct 18714665 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGATAAAACTAACCTGTCTCA 18714723 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||| | ||||||||||||||| || |||||||||||||| ||| || Sbjct 18714724 TGACGGTCTAAACCTAACTCACGTTCCCTATTGGTAAGTGAACAATCCAACACTTGGTGA 18714783 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||| |||| ||||||| |||||||||||||||||||| |||||||||||| ||||| Sbjct 18714784 ATTCTACTTCACAATGATAGAAAGAGCCGACATCGAAGGATAAAAAAGCAACGTTGCTAT 18714843 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||| |||||||||||| |||||| |||||| ||||||||||||| || ||||||||| | Sbjct 18714844 GAATGCTTGGCTGCCATAAGCCAATTATCCATGTGGTAACTTTTATGACACCTCTAGATT 18714903 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||||||| || |||||||||||||||| || |||||| ||| |||||| Sbjct 18714904 CAAATTTCGAAGGTTTAAAGGATCGATAGGCTACGCTTTCAACGTTCGTATTC 18714956 >seq49 Length=17126926 Score = 123 bits (136), Expect = 4e-26 Identities = 144/195 (74%), Gaps = 11/195 (6%) Strand=Plus/Minus Query 43 TAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAA 102 |||||||||||||||||| |||||| ||||| ||| |||| |||| || | Sbjct 2328436 TAAAACTAACCTGTCTCA----------AACCCAACTCACTTTCTCTATGGGTGGATGGA 2328387 Query 103 CAATCCAACGCTTACCGAATTCTGC-TTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 |||| |||| ||| | || | ||| |||||||||||||| || | ||||| | Sbjct 2328386 CAATTCAACACTTGGTAATTTTTTTATTCAAAATGATAGGAAGAGCTGATGTTGAAGGGT 2328327 Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 ||| |||||| || || |||| ||||||| ||| | || |||||| |||||||||| Sbjct 2328326 CAACAAGCAATGTTTGTAGGAACACTTGGCTAAAACAGGACAATTATCCTTGTGGTAACT 2328267 Query 222 TTTCTGGCACCTCTA 236 |||||| |||||||| Sbjct 2328266 TTTCTGACACCTCTA 2328252 Score = 87.8 bits (96), Expect = 3e-15 Identities = 70/85 (82%), Gaps = 7/85 (8%) Strand=Plus/Minus Query 38 TAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACG-------TTCCCTA 90 || ||||||| |||||||||||| || ||||||||||| | ||||| ||||||| Sbjct 2202726 TAAGGTAAAATTAACCTGTCTCACGATGGTCTAAACCCGGTTCACGTTCCGTATTCCCTA 2202667 Query 91 TTAGTGGGTGAACAATCCAACGCTT 115 ||| ||||||||||||||||| ||| Sbjct 2202666 TTAATGGGTGAACAATCCAACACTT 2202642 >seq23 Length=22385789 Score = 93.3 bits (102), Expect = 7e-17 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 196 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGAC 255 |||||| | |||||| | ||||||||||| |||||| ||||| ||||||||| | || | Sbjct 7616614 ACAAGCTAATTATCCATATGGTAACTTTTTTGGCACATCTAGTTTCAAATTTCAAAGGTC 7616555 Query 256 TAAAGGATCGATAGGCCACACTTTCATGGTT 286 ||| ||||| |||||||| ||||| | |||| Sbjct 7616554 TAATGGATCCATAGGCCATACTTTAACGGTT 7616524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854383706592