Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq1907 183 6e-44 seq80 183 6e-44 seq42 113 9e-23 seq12 111 3e-22 seq1906 107 4e-21 seq32 100 6e-19 seq57 93.3 8e-17 seq24 87.8 4e-15 >seq1907 Length=160928 Score = 183 bits (202), Expect = 6e-44 Identities = 180/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 111942 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 112001 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 112002 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 112060 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 112061 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 112120 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 112121 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 112170 Score = 183 bits (202), Expect = 6e-44 Identities = 180/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 138118 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 138059 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 138058 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 138000 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 137999 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 137940 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 137939 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 137890 >seq80 Length=27770 Score = 183 bits (202), Expect = 6e-44 Identities = 180/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 9058 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 8999 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 8998 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 8940 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 8939 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 8880 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 8879 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 8830 >seq42 Length=30274277 Score = 113 bits (124), Expect = 9e-23 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGA--AACCATG 205 |||||||||| |||||||||||| ||| | | ||||| | ||| ||| ||| Sbjct 11894302 GCCTCCCAAAAGGTAACGGAGGCGTACAAGGGTTTCCTCAAGTCGGACGGATTGACC--- 11894246 Query 206 CGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGA 265 | ||| | |||||||| ||||| | |||| | | | |||| | ||| || |||| ||| Sbjct 11894245 CTTACA-TACAAAGGCATAAGGGAGCTTGATTACAAGACCCACCCGTCAAGTAGGGGCGA 11894187 Query 266 AAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAG 325 ||||||| ||| |||| || ||||||||| ||||| || | || ||| | |||||||| Sbjct 11894186 AAGTCGGCTTTAGTGATTCGACGGTGCTGAGTGGAAGGGTCATCACTCAATAGATAAAAG 11894127 Query 326 CTACCCTGGGGATA 339 ||| || |||||| Sbjct 11894126 TTACTCTAGGGATA 11894113 >seq12 Length=21026613 Score = 111 bits (122), Expect = 3e-22 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 ||||||||| | ||||| | |||||||| | | || | |||| |||||||| |||||| Sbjct 2333850 AGTGCAAAGATAGAAGGGAGCTTGACTGCAAGATCCACCAGTCGAGCAGGGATGAAAGTT 2333909 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || |||| |||| || |||||| | ||||| || | |||||| ||||||||||| ||| Sbjct 2333910 GGCCTTAGTGATTCGACGGTGCCAAGTGGAAGGGTCATCGCTCAACGGATAAAAGTTACT 2333969 Query 331 CTGGGGATA 339 || |||||| Sbjct 2333970 CTAGGGATA 2333978 >seq1906 Length=773279 Score = 107 bits (118), Expect = 4e-21 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 569803 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 569744 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| ||| ||| | || || | || || | ||| Sbjct 569743 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 569689 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 569688 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 569629 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 569628 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 569578 >seq32 Length=19818926 Score = 100 bits (110), Expect = 6e-19 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAA----CCA 203 ||||| |||| |||||||| || ||||| | ||||| | | | | | | ||| Sbjct 10258796 GCCTCTCAAAAGGTAACGGAAGCATGCAAAGGTTTCCTCAAGTCGAACGAATATTGGCCA 10258737 Query 204 TGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGAC 263 | || ||||||||| || ||||| | |||||| | | ||| | ||| ||||| ||| Sbjct 10258736 T-CG---AGTGCAAAGACAGAAGGGAGCTTGACTACAAGGCCCACCCGTCGAGCAGAGAC 10258681 Query 264 GAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAA 323 ||||||| | ||| |||| | |||||| || ||||| ||| | |||| ||||||||| Sbjct 10258680 GAAAGTCAGCTTTAGTGATTCAACGGTGCCGAGTGGAAGAGCCATTGCTCAACGGATAAA 10258621 Query 324 AGCTACCCTGGGGATA 339 || ||| || |||||| Sbjct 10258620 AGTTACTCTAGGGATA 10258605 >seq57 Length=24021853 Score = 93.3 bits (102), Expect = 8e-17 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||| | |||| | |||||||| | |||| | || ||||||||||||| || Sbjct 7067584 AGTGCAAAGGTAGAAGGAAGCTTGACTGCAAGACCCACCTATCAAGCAGGGACGAAATTC 7067643 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTAC 329 || |||| ||||||| ||||| | ||||| || ||| ||| || |||||||| ||| Sbjct 7067644 GGCCTTAGTGATCCGATGGTGCCAAGTGGAAGGGTTGTCACTCAACAGATAAAAGTTAC 7067702 Score = 77.0 bits (84), Expect = 6e-12 Identities = 95/129 (74%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| || || |||||||| | | ||| | ||| || ||| | ||||| Sbjct 6029032 AGTGCAAAGGCAGAAAGGAGTTTGACTACAAGACCAACTTGTCACTCAAGGATG-AAGTC 6029090 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 | ||| ||||| |||||||| ||||| || | | |||| | ||||||||| ||| Sbjct 6029091 GACCTTGGTGATCTAATGGTGCTGAGTGGAAGGGTCATTGCTCAATGGATAAAAGTTACT 6029150 Query 331 CTGGGGATA 339 || |||||| Sbjct 6029151 CTAGGGATA 6029159 >seq24 Length=23006712 Score = 87.8 bits (96), Expect = 4e-15 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||| || |||| | || ||| ||||||| |||||||||| ||||||||||| Sbjct 9154008 GGGACCGTCTCAGGTAGACAATTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 9154067 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 ||||| | ||| | || ||| | || | | |||||||||| | ||||| Sbjct 9154068 TTGCAAAGGTTTTCTCGGGCCTGACGGAGA-TTGGCCCTCGAGTGCAAAGGTAGAAGGGA 9154126 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| ||||||||| ||||| || |||| ||||||| ||| Sbjct 9154127 GCTTGACTGCAAGACCCACCTGTCGAGCAGGGACAAAAGTTGGCCTTAGTGATCCGACGG 9154186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982381265632