Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq1907 107 2e-21 seq1906 107 2e-21 seq6 84.2 2e-14 seq32 77.0 4e-12 >seq1907 Length=160928 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 111782 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 111723 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 111722 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 111664 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 111663 ACAAGGAATTTCGCTACCTTAGGACCGTTA 111634 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 138278 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 138337 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 138338 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 138396 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 138397 ACAAGGAATTTCGCTACCTTAGGACCGTTA 138426 >seq1906 Length=773279 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 569947 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 570006 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 570007 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 570066 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 570067 GACAAGGAATTTCGCTACCTTAGGACAGTTA 570097 >seq6 Length=23867706 Score = 84.2 bits (92), Expect = 2e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| |||| |||||||||| ||||| ||||||||||||||||||||||| Sbjct 20423794 TACGCCTTTCGTGCGGGTCAGAACTTACCCAACAAGTAATTTCGCTACCTTAGGACCGTT 20423853 Query 173 A 173 | Sbjct 20423854 A 20423854 >seq32 Length=19818926 Score = 77.0 bits (84), Expect = 4e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || || |||| |||| |||||||||||||||||||||| ||||| |||||||||||| Sbjct 10259094 CCTTTTGTGCGGGTCAGAACTTACCCGACAAGGAATTTTGCTACTTTAGGACCGTTA 10259150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547189890993