Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1907 217 4e-54 seq1 205 2e-50 seq43 143 7e-32 seq32 129 1e-27 seq23 125 2e-26 seq1906 102 2e-19 seq301 102 2e-19 seq44 87.8 4e-15 >seq1907 Length=160928 Score = 217 bits (240), Expect = 4e-54 Identities = 308/416 (74%), Gaps = 18/416 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 110482 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 110426 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 110425 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 110370 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 110369 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 110312 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC--CCAACAAA 244 ||||||| || |||||| | | |||| | ||| ||| |||| |||| || | Sbjct 110311 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGCCCCC--- 110256 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 || ||||||||||||| | |||||||||| | ||||||||||||||| | ||| Sbjct 110255 GTCTCCTCCCACTGCTTGGGAACTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGG 110197 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| || |||||||||||||||| ||| |||||||||| ||| |||||||||| Sbjct 110196 GTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGC 110137 Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 110136 CTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 110081 Score = 217 bits (240), Expect = 4e-54 Identities = 308/416 (74%), Gaps = 18/416 (4%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 139578 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 139634 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 139635 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 139690 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 139691 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 139748 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC--CCAACAAA 244 ||||||| || |||||| | | |||| | ||| ||| |||| |||| || | Sbjct 139749 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGCCCCC--- 139804 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 || ||||||||||||| | |||||||||| | ||||||||||||||| | ||| Sbjct 139805 GTCTCCTCCCACTGCTTGGGAACTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGG 139863 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| || |||||||||||||||| ||| |||||||||| ||| |||||||||| Sbjct 139864 GTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGC 139923 Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 139924 CTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 139979 >seq1 Length=23037639 Score = 205 bits (226), Expect = 2e-50 Identities = 274/364 (75%), Gaps = 18/364 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 17140268 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 17140212 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 17140211 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 17140156 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 17140155 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 17140098 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC--CCAACAAA 244 ||||||| || |||||| | | |||| | ||| ||| |||| |||| || | Sbjct 17140097 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGCCCCC--- 17140042 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 || ||||||||||||| | |||||||||| | ||||||||||||||| | ||| Sbjct 17140041 GTCTCCTCCCACTGCTTGGGAACTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGG 17139983 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| || |||||||||||||||| ||| |||||||||| ||| |||||||||| Sbjct 17139982 GTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGC 17139923 Query 365 CTTG 368 |||| Sbjct 17139922 CTTG 17139919 >seq43 Length=20304914 Score = 143 bits (158), Expect = 7e-32 Identities = 135/171 (79%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| | |||||||||| | ||||||||||||||| | |||||||| Sbjct 9754673 CTCCCACTGCTTGGGAACTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCT 9754731 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| || |||||||||||||||| ||| |||||||||| ||| |||||||||||||| Sbjct 9754732 TTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGC 9754791 Query 370 AGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 9754792 AAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 9754842 >seq32 Length=19818926 Score = 129 bits (142), Expect = 1e-27 Identities = 235/330 (71%), Gaps = 18/330 (5%) Strand=Plus/Plus Query 43 TCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCG 102 |||||| | |||||| ||||| | |||||| ||| || |||| ||| ||||||||| Sbjct 10262003 TCGGTTTGTACCTCCACTTAGTT-TCACCCAAGCTT-CATCCTGGTCAT-GGATAGATCA 10262059 Query 103 CCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTA 162 ||| | || | |||| || || ||| | ||| || ||||||| ||||| |||| Sbjct 10262060 CCCAGGTT-CAGGTCCATAAGT-AGTGACAATT-GCCTTATGAAGACTCTCTTTT-GCTA 10262115 Query 163 CGCCTCCCCTATTCGGTT----AAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATA 218 | ||| || | |||| || || ||||||| |||| ||| ||| |||| | Sbjct 10262116 AGACTC---TAGTGGGTTCCCTAACCTAAGCCACTGCCTATAAATCGTCGACTCATTCTT 10262172 Query 219 CAAAAGGTACGCAGTCACC-CAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTC 277 ||| ||| || || | | ||| | || ||| ||||||| | ||||||||| Sbjct 10262173 CAATAGGCACATGGTTAAAGCCTCAATTTC--CTTCCATTGCTTGTGAACTTACGGTTTC 10262230 Query 278 AGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTC 337 | | ||||||||||||||| | |||||||||||| | ||| |||||||||||||||| Sbjct 10262231 ATGTTCTATTTCACTCCCCAATG-GGGGTTCTTTTCATCCTTCTCTCACGGTACTAGTTC 10262289 Query 338 ACTATCGGTCAGTCAGTAGTATTTAGCCTT 367 |||||||||| | ||||||||||||| Sbjct 10262290 GCTATCGGTCACCTAAGAGTATTTAGCCTT 10262319 >seq23 Length=22385789 Score = 125 bits (138), Expect = 2e-26 Identities = 131/171 (77%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| | || ||||||| | ||||||||||||| | | |||||||| Sbjct 11597445 CTCCCACTGCTTGGGAACTTATGGTTTCATGTTCTATTTCACTCCTCGATG-GGGGTTCT 11597387 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| || |||||||||| ||||| ||| ||||| |||| ||| |||||||||||||| Sbjct 11597386 TTTCACCCTTCCCTCACGATACTACTTCGCTATCAGTCACCCAGAAGTATTTAGCCTTGC 11597327 Query 370 AGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 11597326 AAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 11597276 >seq1906 Length=773279 Score = 102 bits (112), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 571885 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 571943 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 571944 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 572003 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 572004 GTGGTCCCCC 572013 >seq301 Length=1037459 Score = 102 bits (112), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 11480 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 11538 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 11539 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 11598 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 11599 GTGGTCCCCC 11608 >seq44 Length=22053297 Score = 87.8 bits (96), Expect = 4e-15 Identities = 97/128 (76%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||||||| |||| | ||| ||||| | ||||||||||||| | | |||||||| Sbjct 19496744 CTCCCACTACTTGGGAACTTACAATTTCATGTTCTATTTCACTCCTCGATG-GGGGTTCT 19496686 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| | |||||||| |||| || ||| |||||||||| || | ||||||| |||| Sbjct 19496685 TTTCATCCTTCCCTCATGGTATTACTTCGCTATCGGTCACCTAGGAATATTTAGTCTTGC 19496626 Query 370 AGGATGGT 377 | | |||| Sbjct 19496625 AAGGTGGT 19496618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241576322688