Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1907 219 8e-55 seq37 210 4e-52 seq11 206 5e-51 seq51 205 2e-50 seq1 145 2e-32 seq23 138 2e-30 seq1906 136 8e-30 seq301 136 8e-30 seq32 134 3e-29 seq6 105 1e-20 seq42 73.4 8e-11 >seq1907 Length=160928 Score = 219 bits (242), Expect = 8e-55 Identities = 233/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 106164 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 106105 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 106104 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 106045 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 106044 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 105985 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 105984 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 105941 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 105940 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 105882 Query 300 CCACT 304 ||||| Sbjct 105881 CCACT 105877 Score = 219 bits (242), Expect = 8e-55 Identities = 233/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 143896 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 143955 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 143956 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 144015 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 144016 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 144075 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 144076 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 144119 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 144120 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 144178 Query 300 CCACT 304 ||||| Sbjct 144179 CCACT 144183 >seq37 Length=24396255 Score = 210 bits (232), Expect = 4e-52 Identities = 231/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 11913846 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 11913905 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| ||| |||||| | || ||||| ||| Sbjct 11913906 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTAATCATCCTCTCGGACCAGCTACTGAT 11913965 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| | | Sbjct 11913966 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCCCCTCGG 11914025 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 11914026 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 11914069 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 11914070 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 11914128 Query 300 CCACT 304 ||||| Sbjct 11914129 CCACT 11914133 >seq11 Length=21508407 Score = 206 bits (228), Expect = 5e-51 Identities = 144/164 (88%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||||||||||||||||| ||| || ||||||||||||||||||||| Sbjct 3833246 GGCATGGCTGGATCAGGGTTTCCCCCATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAG 3833305 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | || |||||||| || ||||| | | Sbjct 3833306 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACAGCT 3833365 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCC 164 |||||||||||| ||| ||||| |||||||||||||||| ||| Sbjct 3833366 CGTCGGCTTGGTAAGCTTTTATCCCACCAACTACCTAATCTGCC 3833409 >seq51 Length=29360087 Score = 205 bits (226), Expect = 2e-50 Identities = 226/299 (76%), Gaps = 18/299 (6%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| ||||||| | || || |||||||||| |||||||||||||||| Sbjct 7188824 GCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTACCTCCCGTAGGAGTCT 7188765 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||| ||||||||||||| |||||| | ||| | |||| | || ||||| |||| ||| Sbjct 7188764 GGGCCTTGTCTCAGTCCCAGTGTGGCTGATCATCATCTCGGACCAGCTACTGATCATCGC 7188705 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GAT 185 |||||| |||||| ||||||||||| |||||| | ||||||||| || | || ||| Sbjct 7188704 CTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGGGCGGAT 7188645 Query 186 AAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTC 245 || || ||| ||||| | | || | ||||||||| ||||||| Sbjct 7188644 TCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGTCGTTTC 7188601 Query 246 CAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 || ||| |||| ||| || |||||||| || | | ||||||||||||||||||||| Sbjct 7188600 CAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTATGCGTTACTCACCCGTCCGCCACT 7188543 >seq1 Length=23037639 Score = 145 bits (160), Expect = 2e-32 Identities = 214/302 (71%), Gaps = 22/302 (7%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| ||||| | ||| ||||||| | || || |||||||| || ||| |||| | ||| Sbjct 15747142 GCTCCATCAAGATTTTGCCCATTGCGAAAAATTCCCCACTGTTGTCTCTCGTAAAATTCT 15747083 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 || ||||||||| ||||| ||||| | ||| |||||||| | |||||||||| | | Sbjct 15747082 AGGTCGTGTCTCAATCCCAGTGTGGTTGATCATCCTCTCAGACTAGCTACCGATCATTGC 15747023 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATA 186 |||||| |||||| |||||||||||| |||||| | ||||||||||| Sbjct 15747022 CTTGGTAAGCTATTGTCTCACCAACTAGCTAATCAGATGCGAGCCCATC----------- 15746974 Query 187 AATCTTTGGTCAAAGAATGATGCCAT---CCTCTGACATTATGCGGTATTAGCGTTCGTT 243 ||| || | | || | || | | ||| | || | ||||||||| || || Sbjct 15746973 -ATC---GGGC---GGATTTTCCCTTTTGCTTCTTAGCCTACGTGGTATTAGCAGTCTTT 15746921 Query 244 TCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCAC 303 |||| ||| |||| ||| || | |||||| || ||| |||||||||| |||| ||| Sbjct 15746920 TCCAGTTGTTGTTCCCCTCCCAAGGACAGGTT-CTTACGCATTACTCACCCATCCGACAC 15746862 Query 304 TA 305 || Sbjct 15746861 TA 15746860 Score = 114 bits (126), Expect = 3e-23 Identities = 124/164 (76%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| || |||| ||| |||| | || || |||||||| || |||| |||||||||| Sbjct 19615097 GCTCCAGCAGGCTTTTGCCCA----GGAAAATTCCCCACTGTTGTCTCCTGTAGGAGTCT 19615042 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 |||| ||||||||||||| |||| | | ||| ||| | | | ||||| ||| ||| Sbjct 19615041 GGGCTCTGTCTCAGTCCCAGTGTGACTGATCATCCTTTTGGATCAGCTACTGATGATCGT 19614982 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGC 170 |||||| |||||| ||||||||||| | |||| | ||||||| Sbjct 19614981 CTTGGTAAGCTATTGCCTCACCAACTAGCCAATCAGACGCGAGC 19614938 Score = 73.4 bits (80), Expect = 8e-11 Identities = 73/95 (77%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 66 TGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCG 125 ||||| ||||||||||| || |||| | | ||| |||||| | ||||| |||| | | Sbjct 4697206 TGGGCTGTGTCTCAGTCTCAGTGTGACTGATCATCCTCTCGAACTAGCTACTGATCATTG 4697147 Query 126 GCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 |||||| |||||| || |||||||| |||||| Sbjct 4697146 CCTTGGTAAGCTATTGCCTAACCAACTAGCTAATC 4697112 >seq23 Length=22385789 Score = 138 bits (152), Expect = 2e-30 Identities = 212/300 (71%), Gaps = 18/300 (6%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| ||||| | |||| ||||||| | || ||||||| |||||||||||||||||| Sbjct 3892096 GCTCCATCAAGCTTTCACCCATTGCAGAGAATTCCCCACTATTGCCTCCCGTAGGAGTCT 3892155 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 || | ||||| |||||||||||| | | ||| | || | || ||| |||| ||| Sbjct 3892156 AGGTCATGTCTTAGTCCCAATGTGTCTGATCATGCCCTTGGACCAACTATTGATCATCGC 3892215 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GAT 185 |||| | |||||| |||||||||||| || || | ||| ||||| || || ||| ||| Sbjct 3892216 CTTGATAAGCTATTGTCTCACCAACTAGCTGATTAGACGCAAGCCCCTCCTTGAGCGGAT 3892275 Query 186 AAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTC 245 || || ||| ||| | | || | ||||||||| || ||| Sbjct 3892276 TCCTCCTT--TCA------------CTCCCC--ATTTTGTAGGGTATTAGCAATCATTTT 3892319 Query 246 CAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACTA 305 ||| |||||||| || | || |||| ||| || || ||||||||||||||| |||||| Sbjct 3892320 CAATTGTTATTCCCCTGTTAAGGGCAAGTT-CTTACACGTTACTCACCCGTCCACCACTA 3892378 >seq1906 Length=773279 Score = 136 bits (150), Expect = 8e-30 Identities = 122/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 206463 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 206404 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 206403 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 206344 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 206343 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 206311 >seq301 Length=1037459 Score = 136 bits (150), Expect = 8e-30 Identities = 122/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 105467 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 105526 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 105527 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 105586 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 105587 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 105619 >seq32 Length=19818926 Score = 134 bits (148), Expect = 3e-29 Identities = 131/169 (78%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| ||||||| |||| ||||||||| || | ||||| |||| ||||||||||||| | Sbjct 10294998 GCTCCATCAGGATTTCGCCCATTGTGAAAAACTCCCCATTGCTATCTCCCGTAGGAGTTT 10295057 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 || |||||||||| | | ||||| | ||| | |||||| || ||||| |||| ||| Sbjct 10295058 GGATTGTGTCTCAGTACTAGTGTGGTTGATCATCTTCTCAGACCAGCTACTGATCATCGT 10295117 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 ||||| | |||| ||||||||||| |||||| | |||||||| || Sbjct 10295118 ATTGGTAAGATATTGCCTCACCAACTAGCTAATCAGAAGCGAGCCCCTC 10295166 >seq6 Length=23867706 Score = 105 bits (116), Expect = 1e-20 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| ||||||| |||| ||||||| || || ||||||| | |||| ||| |||| | Sbjct 14963842 GCTCCATCAGGCTTTCTCCCATTGCAAAAAATTCCCCACTCTTCCCTCTTGTAAGAGTTT 14963901 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||| | |||||| ||| ||||| | || ||||| ||| || Sbjct 14963902 GGGCCGTGTCTCAGTCCTAGTGTGGCTAATCATCCTCTTGGACCAGCTACTGATTATCAC 14963961 Query 127 CTTGGTGGGCTATTATCTCACCAACT 152 |||||| |||||| ||| |||||| Sbjct 14963962 CTTGGTAAACTATTACCTCGCCAACT 14963987 >seq42 Length=30274277 Score = 73.4 bits (80), Expect = 8e-11 Identities = 100/139 (72%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 21 TCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 80 || |||||||| ||| || |||||||||| || || | |||||||| || ||||||| Sbjct 16617039 TCGCCCATTGTCCAAGATTCCCCACTGCTACCCACCATGGGAGTCTGAGC--TGTCTCAA 16617096 Query 81 TCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATT 140 ||||| |||||| | ||| | | | ||| ||| | |||||||| || | Sbjct 16617097 TCCCAGTGTGGCTGATCATCAGAAAAAATCAACTAAACATCATTGGCTTGGTCAGCCTTG 16617156 Query 141 ATCTCACCAACTACCTAAT 159 | || |||||||||||||| Sbjct 16617157 ACCTGACCAACTACCTAAT 16617175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998380960512