Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1907 210 5e-52 seq1906 167 5e-39 seq301 158 3e-36 seq32 127 5e-27 seq1 95.1 3e-17 >seq1907 Length=160928 Score = 210 bits (232), Expect = 5e-52 Identities = 301/414 (73%), Gaps = 19/414 (5%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 111100 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 111041 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 111040 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 110981 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAG-TCACCCGGCAGCTTCACCACTGACA 176 ||||||| || ||| || ||||| | | || | ||| ||||| || || | Sbjct 110980 ACATTCTCGCTTCCGCTTCG--TCCACACGCCTGCTCGCGCGGGTGCTTC-CCTCTAAGG 110924 Query 177 CG--ACGCTCCCCTACCCAACCAC----ACAGGTTGC----CACAGCTTCGGCGGATAAC 226 || ||||||||||||| | || || || | |||||||||||| ||| | Sbjct 110923 CGGAACGCTCCCCTACCGATGCATTTTTACTTTTTACATCCCACAGCTTCGGCAGATCGC 110864 Query 227 TTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTT 286 ||| |||||| | ||| ||||||| | | || || |||||||||||||||||||||| Sbjct 110863 TTA-GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTT 110806 Query 287 TCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCC 346 |||||| |||||||||| | || |||||||||| ||||| ||| | | || |||||| Sbjct 110805 TCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTAT 110746 Query 347 CACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||||||| || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 110745 CACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 110692 Score = 210 bits (232), Expect = 5e-52 Identities = 301/414 (73%), Gaps = 19/414 (5%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 138960 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 139019 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 139020 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 139079 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAG-TCACCCGGCAGCTTCACCACTGACA 176 ||||||| || ||| || ||||| | | || | ||| ||||| || || | Sbjct 139080 ACATTCTCGCTTCCGCTTCG--TCCACACGCCTGCTCGCGCGGGTGCTTC-CCTCTAAGG 139136 Query 177 CG--ACGCTCCCCTACCCAACCAC----ACAGGTTGC----CACAGCTTCGGCGGATAAC 226 || ||||||||||||| | || || || | |||||||||||| ||| | Sbjct 139137 CGGAACGCTCCCCTACCGATGCATTTTTACTTTTTACATCCCACAGCTTCGGCAGATCGC 139196 Query 227 TTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTT 286 ||| |||||| | ||| ||||||| | | || || |||||||||||||||||||||| Sbjct 139197 TTA-GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTT 139254 Query 287 TCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCC 346 |||||| |||||||||| | || |||||||||| ||||| ||| | | || |||||| Sbjct 139255 TCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTAT 139314 Query 347 CACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||||||| || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 139315 CACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 139368 >seq1906 Length=773279 Score = 167 bits (184), Expect = 5e-39 Identities = 153/192 (80%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 571221 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 571277 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 571278 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 571337 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 571338 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 571397 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 571398 GTTTCCCTCTCG 571409 >seq301 Length=1037459 Score = 158 bits (174), Expect = 3e-36 Identities = 151/192 (79%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 |||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 10815 GCTTCGATGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 10871 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| ||||| |||||||| |||||||||| | |||||||||||||| || Sbjct 10872 GAGCTATTACGCTTTCTTTAAAGGATGGTTGCTTCCAAGTCCACCTCCTGGTTGTCATCG 10931 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 10932 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 10991 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 10992 GTTTCCCTCTCG 11003 >seq32 Length=19818926 Score = 127 bits (140), Expect = 5e-27 Identities = 146/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||||| || ||||| || || | ||| |||| | | || | || Sbjct 10261570 CCACAGCTTCGGCAAATTGCTTAA-CCTCG-TCCATCTTCGGTGTAAGAGTGCTCAATCA 10261627 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||||||||||||||||| || |||||| | | |||||||||| |||||| Sbjct 10261628 GTGAGCTATTACGCACTCTTTCAAGGGTGAATGCTTCTAGGTAAACCTCCTGGCTGTCTA 10261687 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | | || |||||| ||||||| || |||| |||||||| || ||||| ||| Sbjct 10261688 TGCACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGAGGCCTTAGTTGGTGATCCGGG 10261747 Query 387 CTGTTTCCCTCTCG 400 ||||| ||| ||| Sbjct 10261748 TTGTTTTCCTATCG 10261761 >seq1 Length=23037639 Score = 95.1 bits (104), Expect = 3e-17 Identities = 107/142 (75%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || || || |||| ||||| |||||||||||||| ||||| || | | || ||||||||| Sbjct 22949234 CTCGATCAATGAGTTATTATGCACTCTTTCAAGGGTGGCTACTCCTAGGCAAACCTCCTG 22949175 Query 319 GTTGTCTACGCA-ACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGA 377 ||||||| ||| || || | |||| |||| || | || |||| ||||||||| Sbjct 22949174 GTTGTCTCTGCACTCTTTACCTTCTTTATCACTAAGCAATCATCTAGGAGCCTTAGCTAG 22949115 Query 378 TGATCTGGGCTGTTTCCCTCTC 399 ||||| ||| ||||||| || Sbjct 22949114 TGATCCACGCTATTTCCCTTTC 22949093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177577543168