Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq1906 123 2e-26 seq1907 122 7e-26 seq37 122 7e-26 seq23 113 4e-23 seq12 113 4e-23 seq32 78.8 8e-13 >seq1906 Length=773279 Score = 123 bits (136), Expect = 2e-26 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 207934 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 207876 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 207875 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 207816 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 207815 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 207776 >seq1907 Length=160928 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 107063 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 107004 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 107003 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 106944 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 106943 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 106904 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 142997 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 143056 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 143057 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 143116 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 143117 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 143156 >seq37 Length=24396255 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 11912947 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 11913006 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 11913007 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 11913066 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 11913067 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 11913106 >seq23 Length=22385789 Score = 113 bits (124), Expect = 4e-23 Identities = 123/161 (76%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGA-TTAGCTCCCCCTCGCG 60 |||||||||| | ||||||| ||| | ||| || | ||| ||||||| |||||| | Sbjct 9658995 CGAGTTGCAGCATGCAATCCGAACTGAGG-ACAGGTTTTTGGAGTTAGCTCACCCTCGTG 9658937 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 || | ||| |||| ||| |||||||| ||||||| |||| |||||||| || Sbjct 9658936 GGATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCA 9658877 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | | ||||||||||||||| ||||||||||||| || |||| Sbjct 9658876 TAATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 9658836 >seq12 Length=21026613 Score = 113 bits (124), Expect = 4e-23 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||| || || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 4111321 CGAGTTGTAGTCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 4111262 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| | || |||||||| ||| Sbjct 4111261 GATTGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGTCCAGGGCATAAGGGGCAT 4111202 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 4111201 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 4111162 >seq32 Length=19818926 Score = 78.8 bits (86), Expect = 8e-13 Identities = 93/126 (74%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||| ||| ||||||| ||||||| || | | | | ||| ||||||||| || Sbjct 10265418 TTTTTGGAGTTAGCTCACCCTCGCAGGATCGAAACTTTTTGTCCCGACCATTGTAACACA 10265477 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 |||| || | |||||| | ||||| ||||||||||||||| ||||||||| ||||| Sbjct 10265478 TGTGTTGCGTAAGGCATAAGAGGCATGATGACTTGACGTCATCCTCACCTTCCTTCGGTT 10265537 Query 156 TGTCAC 161 | |||| Sbjct 10265538 TATCAC 10265543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415992314790