Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq32 100 3e-19 seq585 89.7 5e-16 >seq32 Length=19818926 Score = 100 bits (110), Expect = 3e-19 Identities = 133/181 (73%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCG-AATACATTACCAT 69 || ||||||| || ||||||||| | |||||||| |||| ||||| ||||||||| ||| Sbjct 10360212 CTGTTACTTTTAAGAAATTAGAGTGCTCAAAGCAAGCCTATGCTCTTAATACATTAACAT 10360271 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | ||| || | ||| |||| ||| | | | ||| | ||||||| Sbjct 10360272 GGGATAACATCATATGATTTT-GGTCATATTCTGTTAGCCTTTGGGATCATA-GTAATGA 10360329 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | |||| ||| | | | ||||| || |||| |||||||||||||||||||| Sbjct 10360330 TTAAGAAGGATGGTCAGAGACATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 10360389 Query 190 T 190 | Sbjct 10360390 T 10360390 >seq585 Length=104249 Score = 89.7 bits (98), Expect = 5e-16 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | |||| ||||| ||| || | ||| Sbjct 101213 ATACATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGAT 101155 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| || | ||| ||||||||| | ||||| || |||| |||||||| Sbjct 101154 CGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAA 101096 Query 178 TTCTTGGATTTAT 190 ||||||||||||| Sbjct 101095 TTCTTGGATTTAT 101083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511990541280