Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq1907 268 1e-69 seq1906 199 6e-49 seq12 190 3e-46 seq301 185 1e-44 seq32 156 7e-36 seq26 149 1e-33 seq23 134 2e-29 seq43 127 3e-27 seq80 118 2e-24 seq35 87.8 3e-15 >seq1907 Length=160928 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 112493 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 112434 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 112433 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 112374 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 112373 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 112314 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 112313 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 112254 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 112253 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 112221 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 137567 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 137626 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 137627 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 137686 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 137687 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 137746 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 137747 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 137806 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 137807 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 137839 >seq1906 Length=773279 Score = 199 bits (220), Expect = 6e-49 Identities = 195/251 (78%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 569277 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 569336 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 569337 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 569396 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 569397 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 569456 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 569457 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 569516 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 569517 AGTCGACATCG 569527 >seq12 Length=21026613 Score = 190 bits (210), Expect = 3e-46 Identities = 206/272 (76%), Gaps = 1/272 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| |||||||| |||| |||||| ||| |||| ||| || ||| Sbjct 2334301 GGTGGGCTTACTACTTAGATGTTTTCAAAAGTTATCCACTCCGCACTTGGCTACCTAGCG 2334242 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| ||| ||||| |||||||||||| Sbjct 2334241 TTTACCGTGGGCACAATAACTGGTACACCAGAGGTGCGTCATTCCCGATCCTCTCGTACT 2334182 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || ||||| || |||||| ||||| ||||||||| | Sbjct 2334181 AGGGAAAGGTCCTCTCAATGCTCTAACGCCTACACCGGATATGGACCAAACTGTCTCATG 2334122 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 || ||||||||||| ||| | || ||||||||||||||| ||||||||| | || | Sbjct 2334121 ACATTCTGAACCCAACTCACAATTCTTTTTAATGGGCGAACAATCCAACCCTTAGAACAT 2334062 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATC 274 ||| |||||||||| | || ||||||||||| Sbjct 2334061 ACTACAGCCCCAGGTGGCGAAGAGCCGACATC 2334030 >seq301 Length=1037459 Score = 185 bits (204), Expect = 1e-44 Identities = 194/252 (77%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 8963 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 9022 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCC-- 146 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 9023 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 9082 Query 147 --TACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| |||||||||||| ||||||||| |||||| ||| ||| Sbjct 9083 TTAACACCAACGGTAGATAGGACCCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 9142 Query 205 GCCTCTTT-AATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGAC 263 || |||| ||| |||||||| | |||||||||||||| ||||| |||||||||| || Sbjct 9143 ACCACTTTGAATCGGCGAACA-CTGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGAT 9201 Query 264 GAGCCGACATCG 275 ||| |||||||| Sbjct 9202 GAGTCGACATCG 9213 >seq32 Length=19818926 Score = 156 bits (172), Expect = 7e-36 Identities = 199/273 (73%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63 || |||||| ||||| || |||| ||||| ||||| |||| ||| || |||| Sbjct 10258282 GGCGGGCTTACTACTTAGGTGATTTCAATAGTTATCTGTTCCACACTTGGCTACCTAGCT 10258341 Query 64 ATGCACTTGG-CAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | ||| || | ||||||| |||||||||| | | || ||||||||||||||| Sbjct 10258342 TTTATTGTGGGCATGATAACTGGTACACCAGAGGTGCATTCTTCTCGGTCCTCTCGTACT 10258401 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| | ||||||||| | |||| ||| |||||| |||||||||||||| | Sbjct 10258402 AGGGAAATGTCCTCTCAATGCTTTAACGCTCACACCGGATATGGACCGAACTGTCTGATG 10258461 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 | |||||||||| || || || | ||||||||| ||||| |||||||||||| || | Sbjct 10258462 ATGTTCTGAACCTAGTTCATGTATCGCTTTAATGGATGAACAACCCAACCCTTGGAACAT 10258521 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| || ||||| | || || ||||||||| Sbjct 10258522 ACTACAACCCCAACTAGCGAAGAACCGACATCG 10258554 >seq26 Length=18140952 Score = 149 bits (164), Expect = 1e-33 Identities = 192/262 (73%), Gaps = 5/262 (2%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATC--CCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGG 73 ||||||||| |||||| ||||| | || || ||| ||| || || | | | | || Sbjct 6187266 CTTAGATGCTTTCAGCAATTATCTACTTTGCA--CTTGGCTACCTAGTGTTTACCATGGG 6187323 Query 74 CAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTC 133 || | |||| || |||||||||| ||| ||| ||||||| ||||| | | || || Sbjct 6187324 CATGATAACTAGTACACCAGAGGTGCATCCTTCCTAGTCCTCTTATACTAGGAAAAGGTC 6187383 Query 134 CTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAAC 193 ||||||| || || ||||| | |||| |||| ||||||||| |||||||||||| Sbjct 6187384 CTCTCAATACTCTAACACCCACACCAGATATAGACCAAACTGTCTCATGACGTTCTGAAC 6187443 Query 194 CCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCC 253 ||| || | | | |||||||||||||||| ||||||||||| || |||| ||| ||| Sbjct 6187444 TCAGTTCACTTACTACTTTAATGGGCGAACAACCCAACCCTTGAAACATACTACAGTCCC 6187503 Query 254 AGGATGAGACGAGCCGACATCG 275 ||| | | |||| |||||| Sbjct 6187504 AGGTGGTAAAAAGCCAACATCG 6187525 >seq23 Length=22385789 Score = 134 bits (148), Expect = 2e-29 Identities = 159/211 (75%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 48 ACTTAGCTTCCCAGC-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATC 106 |||| ||| |||||| | | | | |||| | |||| ||||||||||||| ||| | Sbjct 22345628 ACTTGGCTACCCAGCATTTACCGTGGGCATGATAACTAGTGCACCAGAGGTGCATCCTCC 22345569 Query 107 CCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGG 166 | ||||||||||||| ||| || || | |||| || | || ||| | |||| | Sbjct 22345568 CTAATCCTCTCGTACTAGGGAAAGGTCTTGTCAATGCTCTAATGCTCACACCAGATATAG 22345509 Query 167 ACCGAACTGTCTCGCGACGTTCTGAACCCAGCTC--GC-GTGCCTCTTTAATGGGCGAAC 223 | |||||||||| | |||||||||||||||||| || |||| |||||||||||||| Sbjct 22345508 ATTGAACTGTCTCACAACGTTCTGAACCCAGCTCATGCAGTGC---TTTAATGGGCGAAC 22345452 Query 224 AGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 | |||||||||||| || |||| || ||||| Sbjct 22345451 AACCCAACCCTTGGAACATACTACAACCCCA 22345421 >seq43 Length=20304914 Score = 127 bits (140), Expect = 3e-27 Identities = 134/175 (77%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 101 TCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGG 160 ||| ||| ||||| ||||||| ||| || ||||||||| || | ||| || ||| Sbjct 15158531 TCCTTCCTAGTCCTTTCGTACTGGGGAAAGGTCCTCTCAATGCTCTAATGCCGACATCGG 15158472 Query 161 ATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCG 220 ||| ||||||||||||||| ||||||||||||| | ||| ||| || |||||| || | Sbjct 15158471 ATATGGACCGAACTGTCTCATGACGTTCTGAACCTAACTCACGTACCATTTTAATAGGTG 15158412 Query 221 AACAGCCCAACCCTTGGG-ACCTACTTCAGCCCCAGGATGAGACGAGCCGACATC 274 |||| |||||||| ||| || |||| | ||||||| | | ||||||||||| Sbjct 15158411 AACAACCCAACCCGGGGGAACATACTATAACCCCAGGTGGCAAAGAGCCGACATC 15158357 Score = 109 bits (120), Expect = 9e-22 Identities = 126/167 (75%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 110 GTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACC 169 ||||| ||||| | | | | ||||||||| || || || || |||||| ||||| Sbjct 15157791 GTCCTTTCGTATTGGGAAAGGGTCCTCTCAATGCTCTAACACCGACATCGGATATGGACC 15157732 Query 170 GAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCA 229 |||||| || || |||||||||| ||||| ||| || |||||| |||||||| ||| Sbjct 15157731 AAACTGTTTCATGATGTTCTGAACCTAGCTCACGTACCATTTTAATAGGCGAACAATCCA 15157672 Query 230 ACCCTTGGGACCTACTTCAGCCCCAGGATGA-GACGAGCCGACATCG 275 |||||||| || |||| || ||||| | ||| | |||| ||||||| Sbjct 15157671 ACCCTTGGAACATACTACATCCCCAAG-TGACAAAGAGCTGACATCG 15157626 >seq80 Length=27770 Score = 118 bits (130), Expect = 2e-24 Identities = 80/90 (89%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 186 TTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACT 245 ||||||||||||||| ||| || ||||||||||||||||||||||||||||| || |||| Sbjct 8690 TTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACT 8749 Query 246 TCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||| | || |||||||||||| Sbjct 8750 ACAGCCCCAGGTGGCGAAGAGCCGACATCG 8779 >seq35 Length=22702307 Score = 87.8 bits (96), Expect = 3e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 170 GAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCA 229 |||||||| | | ||||||||||| ||||| || || |||||||||||||||| ||| Sbjct 14088236 GAACTGTCGCACAACGTTCTGAACTTAGCTCATGTACCACTTTAATGGGCGAACAAGCCA 14088177 Query 230 ACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||| | || |||| ||||||||| | | || |||||||| Sbjct 14088176 ACCCTTAGAACATACTATAGCCCCAGGTGGCAAAGAATCGACATCG 14088131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780785575452