Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq11 250 5e-64 seq26 154 3e-35 seq41 111 3e-22 seq39 105 1e-20 seq585 93.3 8e-17 seq37 91.5 3e-16 seq32 89.7 1e-15 >seq11 Length=21508407 Score = 250 bits (276), Expect = 5e-64 Identities = 216/264 (82%), Gaps = 4/264 (2%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||| |||||||||||||| ||| | ||| | ||| | |||||||||||||||||||| | Sbjct 15611559 GCCAGCTTCTTAGAGGGATTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAAG 15611617 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 | ||||||||||||||||||||||| ||||| |||| ||||||||| | ||| |||| Sbjct 15611618 TTTGTGATGCCCTTAGATGTTCTGGACCGCATGCGCACTACACTGATGTATTCAATGAGT 15611677 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 || ||||||||| ||| ||||||||| | ||| | ||||| |||||||||| Sbjct 15611678 CTATAGCCTTGGCCGACAGGCTCAGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGA 15611736 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||||||| ||| |||||||||| |||| ||||||||| ||| ||||||||| ||| Sbjct 15611737 TCATTGCAATTGTTGGTCTTCAACGATGAATTCCTAGTAAGTGCGAGTCATCAGCTTGCG 15611796 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| ||||||||||||||| Sbjct 15611797 TTGACTACATCCCTGCCCTTTGTA 15611820 >seq26 Length=18140952 Score = 154 bits (170), Expect = 3e-35 Identities = 179/239 (75%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | | | || | | |||| |||||| ||||||| || ||| Sbjct 14762896 GCTTCTTAGAGGGACTATAGCCGCTTAGGCTAAGGAAAATTGAGGGAATAACAAGTTTGT 14762955 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||| | ||| || |||||||| | | |||||||| | Sbjct 14762956 GATGCCCTTAGATGTTCTGGGTCACACACGTGCTACACTAATGTATTCAACGAGTCTACA 14763015 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||| | || | |||||||| | ||| | || || || ||||||| ||| Sbjct 14763016 GCCTTGATCAATAGACCCAAGTAATCTT-TGAAATTTCATCATGATGAGGATAGATCATA 14763074 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 |||||||||| ||||||||||||||| |||| |||| | |||||| | | |||||| Sbjct 14763075 GCAATTATTGGTCTTCAACGAGGAATTCCTAATAAGGACAACTCATCAACTCACGTTGA 14763133 >seq41 Length=1300385 Score = 111 bits (122), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| || ||| | ||| | |||||||||||| |||| ||||||| Sbjct 821690 GCTTCTTAGAGGGACCATGATCGCTTAGGCCAA-GGAAGTTTGAGGTGATAATAGGTCTG 821748 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||| ||||||||| | | | || | ||| |||||| | | |||||||| || Sbjct 821749 TGATGCCATTAGATGTTTTAAG-CACATGTGCGTTACACTAATGTATTCAACGAGTCTAT 821807 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTT 217 |||||| ||| |||||||||||||||| Sbjct 821808 AACCTTGACCGACAGGTCTGGGTAATCTT 821836 Score = 96.9 bits (106), Expect = 7e-18 Identities = 113/149 (76%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||| |||||| || ||| | ||| | |||||||||||| |||| ||||||| Sbjct 731019 GCTTCTTAAAGGGACCATGATCGCTTAGGCCAA-GGAAGTTTGAGGTGATAATAGGTCTG 731077 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||| ||||||||| | | | || | ||| |||||| | | |||||||| || Sbjct 731078 TGATGCCTTTAGATGTTTTAAG-CACATGTGCGTTACACTAATGTATTCAACGAGTCTAT 731136 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTT 217 ||||| ||| ||||| |||||||||| Sbjct 731137 AACCTTAACCGACAGGTCCGGGTAATCTT 731165 Score = 91.5 bits (100), Expect = 3e-16 Identities = 98/127 (77%), Gaps = 6/127 (5%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCA---AGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||| || | ||| || | | |||||||||||||||||| | |||| Sbjct 704913 CTTCTTAGAGGGACCAT--GATCACTTAGGCCAAGGAAGTTTGAGGCAATAATACGTCTA 704970 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||| |||| | || || ||||||||| | | |||||||| | Sbjct 704971 CGATGCCCTTAGATGTTTTGGG-CACATGCACGCTACACTAATGTATTCAACGAGTCTGT 705029 Query 189 CACCTTG 195 |||||| Sbjct 705030 AACCTTG 705036 Score = 87.8 bits (96), Expect = 3e-15 Identities = 111/149 (74%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| || ||| | ||| | |||||||||||| |||| | ||||| Sbjct 600048 GCTTCTTAGAGGGACCATAATCGCTTAGGCC-AGGGAAGTTTGAGGTGATAATATGTCTG 600106 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||||||||||||| | || | || | ||| |||| | | | ||| |||| || Sbjct 600107 TGATGCCCTTAGATGTTTTAGG-CACATGTGCGTTACATTAATGTATTCAATGAGTCTAT 600165 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTT 217 |||||| | ||||| | |||||||| Sbjct 600166 AACCTTGATTGACAGGTCCGAGTAATCTT 600194 Score = 75.2 bits (82), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| || ||| | ||| | |||||||| ||| |||| | || || Sbjct 509171 GCTTCTTAGAGGGACCATGATCGCTTAGGCCAA-GGAAGTTTAAGGTGATAATATGTTTG 509229 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||||||||||||| | || | |||| ||| |||| | | | ||| |||| | Sbjct 509230 TGATGCCCTTAGATGTTTTAGG-CACACGTGCGTTACATTAATGTATTCAATGAGTCTCT 509288 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTT 217 ||||| | ||||| | |||||||| Sbjct 509289 AACCTTTATTGACAGGTCCGAGTAATCTT 509317 >seq39 Length=212746 Score = 105 bits (116), Expect = 1e-20 Identities = 115/149 (77%), Gaps = 4/149 (3%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| || ||| | ||| ||| |||||||||| |||| ||||||| Sbjct 38952 GCTTCTTAGAGGGACCATGATCGCTTAGGCCAATG-AAGTTTGAGGTGATAATAGGTCTG 38894 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||| ||||||||| | || | || ||| |||||| | | |||||||| || Sbjct 38893 TGATGCCATTAGATGTTTTAGG-CACATATGCGTTACACTAATGTATTCAACGAGTCTAT 38835 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTT 217 |||||| ||| ||||| |||||||||| Sbjct 38834 AACCTTGACCGACAGGTCCGGGTAATCTT 38806 Score = 102 bits (112), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 4/149 (3%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||| |||||| || ||| | ||| | | |||||||||| |||| ||||||| Sbjct 112953 GCTTCTTAAAGGGACCATGATCGCTTAGGCCAAAG-AAGTTTGAGGTGATAATAGGTCTG 112895 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||| ||||||||| | || | || | ||| |||||| | | |||||||| || Sbjct 112894 TGATGCCTTTAGATGTTTTAGG-CACATGTGCGTTACACTAATGTATTCAACGAGTCTAT 112836 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTT 217 |||||| ||| ||||| |||||||||| Sbjct 112835 AACCTTGACCGACAGGTCCGGGTAATCTT 112807 Score = 80.6 bits (88), Expect = 5e-13 Identities = 110/149 (74%), Gaps = 5/149 (3%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| || ||| | ||| | |||||||| ||| |||| | ||||| Sbjct 6190 GCTTCTTAGAGGGACCATGATCGCTTAGGCCAA-GGAAGTTTAAGGTGATAATATGTCTG 6132 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||||||||||||| | || | |||| ||| |||| | | | ||| |||| | Sbjct 6131 TGATGCCCTTAGATGTTTTAGG-CACACGTGCGTTACATTAATGTATTCAATGAGTCTCT 6073 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTT 217 ||||| | ||||| |||||||||| Sbjct 6072 AACCTTTATTGACAGGTC-GGGTAATCTT 6045 >seq585 Length=104249 Score = 93.3 bits (102), Expect = 8e-17 Identities = 67/75 (89%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||| |||||||||||||||||| | ||| | ||| | |||||||||||||||||||||| Sbjct 100630 GCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGG 100572 Query 125 TCTGTGATGCCCTTA 139 ||||||||||||||| Sbjct 100571 TCTGTGATGCCCTTA 100557 >seq37 Length=24396255 Score = 91.5 bits (100), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGCTCA---AGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 ||||||||||||||| || | ||| || | | | |||||||||| |||| |||| | Sbjct 16979554 GCTTCTTAGAGGGACCAT--GATCACTTAGGCCAAGAAAGTTTGAGGTGATAATAGGTTT 16979611 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA 187 |||||||||||||||||| | | | || | ||| |||||| | | |||||||| | Sbjct 16979612 GTGATGCCCTTAGATGTT-TTAGACACATGTGCGTTACACTAATGTATGCAACGAGTCTA 16979670 Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTT 217 | |||||| | ||||| |||||||||| Sbjct 16979671 TAACCTTGATTGACAGGTCCGGGTAATCTT 16979700 Score = 87.8 bits (96), Expect = 3e-15 Identities = 111/150 (74%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGCTCA---AGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 ||||||||||||||| || | ||| || | | | |||||||||| |||| |||| | Sbjct 17251658 GCTTCTTAGAGGGACCAT--GATCACTTAGGCCAAGAAAGTTTGAGGTGATAATAGGTTT 17251715 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA 187 |||||||||||||||||| | | | || | | | |||||| | | |||||||| | Sbjct 17251716 GTGATGCCCTTAGATGTT-TTAGACACATGTGTGTTACACTAATGTATGCAACGAGTCTA 17251774 Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTT 217 | |||||| | ||||| |||||||||| Sbjct 17251775 TAACCTTGATTGACAGGTCCGGGTAATCTT 17251804 Score = 87.8 bits (96), Expect = 3e-15 Identities = 86/109 (79%), Gaps = 4/109 (4%) Strand=Plus/Plus Query 64 GTCGCCGGCTTCTTAGAGGGACTAT--CGGCTCAAGCCGATGGAAGTTTGAGGCAATAAC 121 || ||| ||||||||||||||||| || ||||| ||| |||||||||| || | | Sbjct 23654593 GTGGCCAACTTCTTAGAGGGACTATGGTGGTTCAAG--AATGAAAGTTTGAGGTAAGATC 23654650 Query 122 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||| ||||||||| ||| ||||| ||| |||||| | |||||| ||| Sbjct 23654651 AGGTTTGTGATGCCTTTACATGTTTTGGACCGCACACATGCTACATTGA 23654699 >seq32 Length=19818926 Score = 89.7 bits (98), Expect = 1e-15 Identities = 98/128 (77%), Gaps = 3/128 (2%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||||||| | | | || | |||| |||||||||| ||||||||| Sbjct 6550528 GCTTCTTAGAGGGACTAT-GACAATTTAGGATAAGGAAATTTGAGGCAACAACAGGTCTA 6550470 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||| |||||||||| ||| ||||| | | | |||| ||| | |||||||| || Sbjct 6550469 TGATGCTCTTAGATGTTTTGGACCGCATGTGTGTTACATTGATGTATTCAACGAGTCTAT 6550410 Query 189 CACCTTGG 196 |||||| Sbjct 6550409 AGCCTTGG 6550402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947181936896