Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq1907 132 9e-29 seq42 113 8e-23 seq23 96.9 6e-18 seq991 93.3 8e-17 seq1906 77.0 6e-12 seq301 77.0 6e-12 seq37 77.0 6e-12 seq1662 73.4 7e-11 >seq1907 Length=160928 Score = 132 bits (146), Expect = 9e-29 Identities = 178/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 109722 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 109781 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 109782 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 109834 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 109835 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 109891 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 109892 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 109951 Query 249 CCT 251 ||| Sbjct 109952 CCT 109954 Score = 132 bits (146), Expect = 9e-29 Identities = 178/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 140338 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 140279 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 140278 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 140226 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 140225 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 140169 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 140168 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 140109 Query 249 CCT 251 ||| Sbjct 140108 CCT 140106 >seq42 Length=30274277 Score = 113 bits (124), Expect = 8e-23 Identities = 170/237 (72%), Gaps = 11/237 (5%) Strand=Plus/Minus Query 9 TGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGG 68 |||||||||||| ||| | || ||||||| | |||||| | | | | || ||| Sbjct 23356195 TGGTGGATGCCTAGGCACCCATAGACGATGAAAGGTGTAGTAAGTAACTAAATACTTCGG 23356136 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128 ||||| | ||| | | | ||||| ||||| |||||| || |||| ||| | Sbjct 23356135 GGAGTTAA-AAATAAGCATAGATCCAGAGATTCCCGAATAGGTCAACC------TTTCGA 23356083 Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187 |||| || ||||| |||||| | |||| || || |||||||| |||||||| || Sbjct 23356082 --ATTGT-TGTTGAATCCATAGGCAGGCAAGAGACAATCTGGCGAACTAAAACATCTTAG 23356026 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 |||| ||||||||||| ||| | |||||||| ||||||| ||||||||||||| Sbjct 23356025 TAGCCAAAGGAAAAGAAAGCAAAAGCGATTCCCATAGTAGTGATGAGCGAAATGGGA 23355969 >seq23 Length=22385789 Score = 96.9 bits (106), Expect = 6e-18 Identities = 170/242 (70%), Gaps = 12/242 (5%) Strand=Plus/Plus Query 11 GTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGG 70 |||||| ||| ||| | || ||| ||| ||||||| ||| | ||| ||| | Sbjct 11596919 GTGGATACCTAGGCACCCAGAGACGAGAAAGAGCGTAGTAAGCAACGAAATGCTTCGGAG 11596978 Query 71 AGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTC 130 ||| | ||| | | | |||||| ||||| |||||| || |||| ||| | | Sbjct 11596979 AGTT-GAAAATAAGCATAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAAC 11597031 Query 131 ATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTA 189 ||| |||||||| ||| || | |||| || ||| |||||||||||||||| |||| Sbjct 11597032 --TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTAGCGAACTGAAACATCTTAGTA 11597088 Query 190 GCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGC 249 || ||||||||||| | | | ||||||| ||||| || |||||||||| || ||| Sbjct 11597089 GCCAGAGGAAAAGAAAGCCAAAGCGATTCCCGTAGTAGCGG-GAGCGAAATGAGAACAGC 11597147 Query 250 CT 251 || Sbjct 11597148 CT 11597149 >seq991 Length=665473 Score = 93.3 bits (102), Expect = 8e-17 Identities = 91/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| ||| || | |||| || ||| || ||||||||||||| |||||| | | Sbjct 540315 TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGAAAACTGAAACATCTTAGTAGCCGGA 540256 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||||||| ||| | ||||| ||||| |||||||||||||||| ||||| Sbjct 540255 GGAAAAGAAAGCAAAAGCAATTCCAGTAGTAGCGGCGAGCGAAATGGGAGTAGCCT 540200 >seq1906 Length=773279 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 301918 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 301977 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 301978 GGCGAGCGAGAGCGGAT 301994 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 572584 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 572525 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 572524 GGCGAGCGAGAGCGGAT 572508 >seq301 Length=1037459 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 12179 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 12120 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 12119 GGCGAGCGAGAGCGGAT 12103 >seq37 Length=24396255 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 14521759 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 14521700 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 14521699 GGCGAGCGAGAGCGGAT 14521683 >seq1662 Length=244511 Score = 73.4 bits (80), Expect = 7e-11 Identities = 66/83 (80%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 ||| |||| ||||||| |||||| ||||||||||| ||| | ||||||| ||||| Sbjct 223184 GGCAAACTAAAACATCATAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAG 223125 Query 228 TGGCGAGCGAAATGGGATGAGCC 250 ||||||||||||||| |||| Sbjct 223124 CAGCGAGCGAAATGGGAGCAGCC 223102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918382486112