Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3 590 2e-166 seq51 242 1e-61 seq43 223 1e-55 seq23 168 2e-39 seq6 129 2e-27 seq1442 114 4e-23 seq9 111 5e-22 seq44 87.8 6e-15 seq1906 78.8 3e-12 seq42 77.0 1e-11 >seq3 Length=18779844 Score = 590 bits (654), Expect = 2e-166 Identities = 453/533 (85%), Gaps = 8/533 (2%) Strand=Plus/Plus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 ||||| |||||| ||||||| ||||||| | || | ||||||||||||||||||| Sbjct 18714991 TTTTGTTCTACACGAGATTTTTGTTCTCGTTAAGCTCATCTTAGGACACCTGCGTTATCT 18715050 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127 ||||||||||||| | |||||||||||||||||||||||||||||| || | | |||| Sbjct 18715051 TTTAACAGATGTGTCACCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCTTGAATCG 18715110 Query 128 GCCCGCGAAGG----ACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCAT 183 | || || ||||| ||| || | || | || || |||| |||| Sbjct 18715111 AC--GCATTGGGCCAACCTTGGGTCCAAAAGAAGGG-GATGCTCCCCGCCTCCGATTCAC 18715167 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-CGGCTCCCA 242 || ||||||||| |||| ||| ||||||||||||||||| | ||| | ||||||| Sbjct 18715168 AGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCACCGTTTTCAGCTCCCA 18715227 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 18715228 CTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGAACTAGAGTCAAGCTCAACAGGGT 18715287 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 18715288 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCTTTGGCTGTGGTTTCGCTAGATAGTA 18715347 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 || | |||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| Sbjct 18715348 GACAAGGACAGTGGGAATCTCATTAATCCATTCATGCGCATCACTAATTAGATGACAAGG 18715407 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 ||||||||||||||||||||||||||||||||| | ||||||||| || ||||||||||| Sbjct 18715408 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCTCACCGTTTACCTGCACTTGGTTGAAT 18715467 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 || ||||||||||||||||||||| || | |||||||||||||||| | |||| Sbjct 18715468 TTTTTCACTTTGACATTCAGAGCATTGAGTAGAAATCACATTGCGTGAGCATC 18715520 >seq51 Length=29360087 Score = 242 bits (268), Expect = 1e-61 Identities = 266/350 (76%), Gaps = 29/350 (8%) Strand=Plus/Minus Query 86 CCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGC---GAAGGACCT 142 |||||||||||| | |||| |||||||| | ||| |||||| | ||| || | ||| Sbjct 24725330 CCAGCCAAACTCTCTACCTAACAATGTCTTTCACCAGGATCGACGCGCATGGATGTGCCT 24725271 Query 143 TAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTT-----CATTGATTAAGTaaaaa 197 | ||| ||||| || || | | | || || ||| || |||||||||| Sbjct 24725270 TGGGTCCA--AAATGA--GGGGATGCTCCCTACCTCTCTAACACATGGAATAAGTAAAAA 24725215 Query 198 -aaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCT 256 ||| ||| ||||||||||||||||| || || | | | |||| ||||||| Sbjct 24725214 TAACATTAAAAGTAGTGGTATTTCACTTTCGTCGT------TTCTAGTTATCCTACACCC 24725161 Query 257 C---------TCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCT 307 | | ||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 24725160 CCACCCCCCCTAAAGTCATTTCACAAAGTCGAACTAGAGTCAAGCTCAACAAGGTCTTCT 24725101 Query 308 TTCCCCGCTGATTCCGCCAAG-CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 || |||| ||||||||||||| ||| |||| |||||| |||||||| | ||||||||| | Sbjct 24725100 TTTCCCGTTGATTCCGCCAAGCCCCTTTCCTTTGGCTATGGTTTCGTTGGATAGTAGACA 24725041 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||| ||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 24725040 AGGATAGTGGGATTCTTGTTAATCCATTCATGCGCGTCACTAATTAGATG 24724991 Score = 87.8 bits (96), Expect = 6e-15 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 470 CGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTC 529 ||||| |||||||||||| ||||||||||| |||||| ||||||||||||||||||| | Sbjct 1583784 CGCTTAGTTGAATTTCTTTACTTTGACATTTAGAGCATTGGGCAGAAATCACATTGCATG 1583725 Query 530 AACATC 535 | |||| Sbjct 1583724 AGCATC 1583719 >seq43 Length=20304914 Score = 223 bits (246), Expect = 1e-55 Identities = 140/151 (93%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 385 TTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGT 444 ||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 7998172 TTAATCCATTCATGCACGTCACTAATTAGATGATGAGGAATTTGGCTACCTTAAGAGAGT 7998113 Query 445 CATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAG 504 ||||||||||| |||||||||||| || ||||||||||||||||||||||||||| |||| Sbjct 7998112 CATAGTTACTCTCGCCGTTTACCCACGTTTGGTTGAATTTCTTCACTTTGACATTTAGAG 7998053 Query 505 CACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||| |||||||| ||||| | |||| Sbjct 7998052 CACTGGGCAAAAATCACACTGCGTGAGCATC 7998022 Score = 185 bits (204), Expect = 3e-44 Identities = 136/156 (87%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 || ||||||| |||||||||| ||||||||||||||| |||||||||||| ||| ||||| Sbjct 3023019 TCTCACTTATCCTACACCTCTTAAGTCATTTCACAAAATCGGACTAGAGTTAAGTTCAAC 3022960 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||| |||| || || ||||||||| ||||| || |||||||||||||||||| |||||| Sbjct 3022959 AGGATCTTTTTGCCACGCTGATTCTGCCAA-CCTATTCCCTTGGCTGTGGTTTTGCTAGA 3022901 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCAT 393 || |||| ||||| |||||||||||||||||||| Sbjct 3022900 TAATAGA-CTGGACAATGGGAATCTCGTTAATCCAT 3022866 Score = 179 bits (198), Expect = 1e-42 Identities = 164/205 (80%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 194 aaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA--CGGCTCCCACTTATTCTA 251 |||| || ||| ||||||||||||||||| | || | |||||||||||| || Sbjct 16885129 AAAATACATTAAAAGTAGTGGTATTTCACTTTGGTCGTTTTTCAGCTCCCACTTATCTTA 16885070 Query 252 CACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCC 311 || | |||||||||||||||||||||||||| ||||||| |||||| | | |||||| Sbjct 16885069 CATTTTTCAAGTCATTTCACAAAGTCGGACTAAAGTCAAGTTCAACAAGATTTTCTTTTT 16885010 Query 312 CCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGAC 371 ||||| |||| ||| | | |||| ||| || | |||| ||||||||||||| | |||| Sbjct 16885009 TCGCTGGTTCCAGCAAACACATTCCATTGACTAT-GTTTTGCTAGATAGTAGACATGGAC 16884951 Query 372 AGTGGGAATCTCGTTAATCCATTCA 396 | ||||||||||||||||||||||| Sbjct 16884950 AATGGGAATCTCGTTAATCCATTCA 16884926 Score = 95.1 bits (104), Expect = 4e-17 Identities = 88/111 (79%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA--CGGCTCCCACTT 245 ||| ||||| |||| ||| ||||||||||||||||| || | | |||||||||| Sbjct 16889660 TAAATAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGTTGTTTTTCAGCTCCCACTT 16889601 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || |||| | ||||||||||||| ||||||| |||| ||||||| |||| Sbjct 16889600 ATCTTACATTTTTCAAGTCATTTCATAAAGTCGAACTAAAGTCAAGTTCAA 16889550 >seq23 Length=22385789 Score = 168 bits (186), Expect = 2e-39 Identities = 159/205 (78%), Gaps = 16/205 (8%) Strand=Plus/Plus Query 316 TGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTG 375 |||||| || ||||| || | ||| |||||||||| | ||| ||||| | ||| ||| Sbjct 4286792 TGATTCTGCTAAGCCTATTGCTCTGGTTGTGGTTTCGATGGAT-GTAGAAAAGGATAGTA 4286850 Query 376 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCT 435 || || ||||| |||||||||| ||| | |||||||| |||||| Sbjct 4286851 ACAACCTTGTTAACCCATTCATGCACGTTATTAATTAGA---------------CTACCT 4286895 Query 436 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA 495 |||||||||||||| ||||||| ||||||| | || |||| ||||||||||||||||||| Sbjct 4286896 TAAGAGAGTCATAGCTACTCCCACCGTTTATCTGCACTTGATTGAATTTCTTCACTTTGA 4286955 Query 496 CATTCAGAGCACTGGGCAGAAATCA 520 |||| |||||| ||||||||||||| Sbjct 4286956 CATTTAGAGCATTGGGCAGAAATCA 4286980 >seq6 Length=23867706 Score = 129 bits (142), Expect = 2e-27 Identities = 153/210 (73%), Gaps = 23/210 (11%) Strand=Plus/Minus Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 |||||| ||||||| |||||||||| | |||| |||| ||||||||| ||||| Sbjct 5134900 ATTCTATACCTCTCGAGTCATTTCATAGAGTCAAACTAAAGTCAAGCT-------GTCTT 5134848 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||| ||| ||||||||| |||||||||| | ||| |||| Sbjct 5134847 CTTTCCCT----ATT------------TTCCCTTGGTTGTGGTTTCGTTGAATACTAGAC 5134804 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 | ||||| ||||| ||| ||| || |||| |||| | | ||||||||| ||| ||| Sbjct 5134803 AAAAACAGTAAAAATCTAGTTCATCTATCCATGTGCGTGATTGATTAGATGATGAGACAT 5134744 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTC 455 ||| ||| |||||||||||||| |||| || Sbjct 5134743 TTGACTATCTTAAGAGAGTCATGGTTAATC 5134714 Score = 91.5 bits (100), Expect = 5e-16 Identities = 101/132 (77%), Gaps = 12/132 (9%) Strand=Plus/Minus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 ||||| |||| |||||||| || || | | |||| | ||||| || |||| ||| || Sbjct 18052068 GAGTCGAGCTTAACAGGGTTTTTTTAAC--GTTGAT-CTGCCAAACCGGTTCTCTTAACT 18052012 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 ||||||||| | ||||||||| | || ||||||||||||||||||||| ||| Sbjct 18052011 GTGGTTTCGTTCGATAGTAGAGAAGG-TAGTGGGAATCTCGTTAATCCA--------CGT 18051961 Query 404 CACTAATTAGAT 415 |||| ||||||| Sbjct 18051960 CACTCATTAGAT 18051949 >seq1442 Length=101927 Score = 114 bits (126), Expect = 4e-23 Identities = 75/83 (90%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 47 CTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 106 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 73780 CTTAGGATACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCCAA 73721 Query 107 CAATGTCATCAACCCGGATCGGC 129 ||||||| || |||| ||||||| Sbjct 73720 CAATGTCTTCCACCCTGATCGGC 73698 Score = 109 bits (120), Expect = 2e-21 Identities = 74/83 (89%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 47 CTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 106 ||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| | Sbjct 71344 CTTAGGATACCTACGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCCAA 71285 Query 107 CAATGTCATCAACCCGGATCGGC 129 ||||||| || |||| ||||||| Sbjct 71284 CAATGTCTTCCACCCTGATCGGC 71262 >seq9 Length=25021643 Score = 111 bits (122), Expect = 5e-22 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 411 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGC 470 ||||||| || ||||| |||| ||||||||||||||||||||| | || |||| | Sbjct 22145329 TAGATGATAAGACATTTTGCTATCTTAAGAGAGTCATAGTTACTTCTACCATTTATTCAT 22145270 Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 | || |||||||| || ||||||||||| ||||||||||||| ||||| |||| || | Sbjct 22145269 GTTTAATTGAATTTATTTACTTTGACATTTAGAGCACTGGGCAATAATCATATTGTGTGA 22145210 Query 531 ACAT 534 ||| Sbjct 22145209 GCAT 22145206 >seq44 Length=22053297 Score = 87.8 bits (96), Expect = 6e-15 Identities = 69/82 (84%), Gaps = 3/82 (4%) Strand=Plus/Plus Query 350 TCGCTAGATAGTAGATAGGGACAGTGGG---AATCTCGTTAATCCATTCATGCGCGTCAC 406 || || ||| ||||| ||||||||| || |||||||| ||||||||| ||| || || Sbjct 19373534 TCCCTGGATGGTAGACAGGGACAGTCGGGAAAATCTCGTCAATCCATTCTTGCCCGGAAC 19373593 Query 407 TAATTAGATGACGAGGCATTTG 428 |||||||||||||||||||||| Sbjct 19373594 TAATTAGATGACGAGGCATTTG 19373615 >seq1906 Length=773279 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 570020 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 570079 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 570080 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 570125 >seq42 Length=30274277 Score = 77.0 bits (84), Expect = 1e-11 Identities = 83/109 (76%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| || |||||| ||||| || | |||||||||||| ||||| Sbjct 342383 CTTTTGTTCCACACGAAATTTCTATTCTCGTCGAACTCATCTTAGGACACCTTTGTTATC 342442 Query 67 GTTTAACAGATGTGC--CGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 || ||||||||||| ||||| |||||||||||| || | |||||| Sbjct 342443 ATTCAACAGATGTGCTATACCCCAACCAAACTCCCCAGCTAATAATGTC 342491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635168816736