Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq1907 192 2e-46 seq1906 190 7e-46 seq6 114 4e-23 seq35 105 2e-20 seq32 98.7 3e-18 seq44 86.0 2e-14 seq80 84.2 7e-14 seq57 80.6 9e-13 >seq1907 Length=160928 Score = 192 bits (212), Expect = 2e-46 Identities = 392/570 (69%), Gaps = 23/570 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 112086 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 112027 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 112026 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 111968 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 111967 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 111908 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234 | | ||||||||||| ||| | | ||| | | || || | |||| | Sbjct 111907 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAG-GAGGCCT--T 111851 Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292 | | | | ||||||| || | || || || | || |||||| ||| | | |||| Sbjct 111850 CTTCGCCCTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTG 111793 Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351 ||| | | |||||||| |||| | || | | ||||||| || | | | Sbjct 111792 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTA 111733 Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410 |||||||| |||| | ||||||| | || |||||||||| ||||||| |||||| Sbjct 111732 TTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 111674 Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 111673 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 111614 Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530 |||||||| | ||| ||| || || | | |||| | ||| ||||| Sbjct 111613 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 111560 Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 || |||| ||||||||||||| || |||| Sbjct 111559 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 111530 Score = 192 bits (212), Expect = 2e-46 Identities = 392/570 (69%), Gaps = 23/570 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 137974 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 138033 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 138034 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 138092 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 138093 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 138152 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234 | | ||||||||||| ||| | | ||| | | || || | |||| | Sbjct 138153 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAG-GAGGCCT--T 138209 Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292 | | | | ||||||| || | || || || | || |||||| ||| | | |||| Sbjct 138210 CTTCGCCCTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTG 138267 Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351 ||| | | |||||||| |||| | || | | ||||||| || | | | Sbjct 138268 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTA 138327 Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410 |||||||| |||| | ||||||| | || |||||||||| ||||||| |||||| Sbjct 138328 TTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 138386 Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 138387 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 138446 Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530 |||||||| | ||| ||| || || | | |||| | ||| ||||| Sbjct 138447 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 138500 Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 || |||| ||||||||||||| || |||| Sbjct 138501 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 138530 >seq1906 Length=773279 Score = 190 bits (210), Expect = 7e-46 Identities = 294/414 (71%), Gaps = 22/414 (5%) Strand=Plus/Plus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||| | | |||||||||| ||| ||||| || ||||||||| ||||||||||||| Sbjct 569733 ACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAGATAAACTACCCACCT 569791 Query 136 GGCACTGTCCC--CAACCCAGA--TCATGG-GCCAAGGTTAGATATCCACTACGGTCAGA 190 ||| |||||| | ||| || || || || |||||| |||| | ||| Sbjct 569792 CGCAGTGTCCCGCCCCCCCCGAATTCTCGGTGCGGCGGTTAGGCATCCTTAGACGAAAGA 569851 Query 191 GTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTA 250 ||||| ||||| | | || | | ||| | || | ||||||||| Sbjct 569852 GTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC------TCCCACCTA 569896 Query 251 TCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTT 309 ||||||||| | | || || | | |||||||||| ||||| | ||||||||| Sbjct 569897 TCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTTA 569956 Query 310 TCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGT 369 |||| |||| | | ||||||| || | | ||||||||||||| | || Sbjct 569957 CCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTC 570016 Query 370 TGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAAT 429 |||||||| ||| ||||||||| |||||||||||||||| ||||| ||||||||||| Sbjct 570017 GGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAAT 570076 Query 430 TTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 ||||||||||||||| |||| |||||| ||||||||||| |||||||| ||| Sbjct 570077 TTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATT 570130 >seq6 Length=23867706 Score = 114 bits (126), Expect = 4e-23 Identities = 81/93 (87%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||||| |||| |||||||||| ||||| |||||||||||||||||| Sbjct 20423790 TCGTTACGCCTTTCGTGCGGGTCAGAACTTACCCAACAAGTAATTTCGCTACCTTAGGAC 20423849 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 ||||||||||| ||||||||| | |||||| Sbjct 20423850 CGTTATAGTTACGACCGCCGTTCATCAGGGCTT 20423882 >seq35 Length=22702307 Score = 105 bits (116), Expect = 2e-20 Identities = 78/91 (86%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGG 447 ||||| || ||| ||||||| |||||| || |||||||||||| ||||||||||||| | Sbjct 14586903 GTTACTCCTTTCATGCAGGTTGGAACTAACATGACAAGGAATTTTGCTACCTTAGGATCG 14586962 Query 448 TTATAGTTACCACCGCCGTTTACTGGGGCTT 478 ||||||||| ||||| ||| |||||||||| Sbjct 14586963 TTATAGTTATGACCGCTGTTCACTGGGGCTT 14586993 Score = 86.0 bits (94), Expect = 2e-14 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 393 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATA 452 ||| |||||| ||| | ||||| | |||||||||||| ||||||||||||| |||||| Sbjct 14648040 GCCTTTCGTGTGGGTTGAAACTTGCTTGACAAGGAATTTTGCTACCTTAGGATTGTTATA 14647981 Query 453 GTTACCACCGCCGTTTACTGGGGCTTC 479 |||| || | |||| || |||||||| Sbjct 14647980 GTTATGACTGTCGTTCACCGGGGCTTC 14647954 >seq32 Length=19818926 Score = 98.7 bits (108), Expect = 3e-18 Identities = 88/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||| | |||||||| | || |||||| ||| || |||| |||| Sbjct 10259051 ATTTCACCGAGCCTTTCTCTGAGACAGT-GCTCAGATCGTTATGCCTTTTGTGCGGGTCA 10259109 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTAC 457 |||||||||||||||||||||| ||||| |||||| ||||||||||| Sbjct 10259110 GAACTTACCCGACAAGGAATTTTGCTACTTTAGGACCGTTATAGTTAC 10259157 >seq44 Length=22053297 Score = 86.0 bits (94), Expect = 2e-14 Identities = 81/102 (79%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 386 TCGTTACGCCATT-CGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 444 || ||||||| || ||||| ||| ||||||||| ||||| |||||| ||||||||||| Sbjct 4241850 TCATTACGCCTTTTCGTGCGGGTTGGAACTTACTTGACAACGAATTTTACTACCTTAGGA 4241791 Query 445 TGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACC 486 | ||| ||||||| || ||| || | ||||||||| ||| Sbjct 4241790 TTGTTGTAGTTACAACTGCCATTCATCAAGGCTTCAATCACC 4241749 >seq80 Length=27770 Score = 84.2 bits (92), Expect = 7e-14 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 8914 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 8973 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | | ||||||| Sbjct 8974 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCAT 9032 Query 121 TTAAACTACCCACCAGGCACTGTCCC 146 ||||| | ||| | |||||||| Sbjct 9033 AGAAACTGTCTACCTGAGACTGTCCC 9058 >seq57 Length=24021853 Score = 80.6 bits (88), Expect = 9e-13 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||| | ||| |||||||| | ||||| | |||||||||||| ||||||||| | Sbjct 1624590 TCGTTACGTCTTTCATGCAGGTCAAAGCTTACTCAACAAGGAATTTCACTACCTTAGAAC 1624531 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 |||||| |||| || || ||||| | ||||| Sbjct 1624530 CGTTATAATTACAGCCACCATTTACCAGAGCTTC 1624497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702367535232