Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq11 185 2e-44 seq1907 123 5e-26 seq37 118 2e-24 seq1906 116 8e-24 seq301 116 8e-24 seq51 89.7 1e-15 seq32 75.2 2e-11 >seq11 Length=21508407 Score = 185 bits (204), Expect = 2e-44 Identities = 215/286 (75%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAA-GGTACATACAAGCTCCCAC--- 56 ||||||||||||| ||||| ||| ||||||||| | | ||||| || | ||| | Sbjct 3833120 GGCTGCTGGCACGTAGTTAACCGGTGCTTATTCTTTACGGTACCGTCATGAGCCCTCTTT 3833179 Query 57 ACGTGGAAGG---TTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCC 113 | | |||| |||| | || || ||||| ||||||||| ||| || ||||||||| Sbjct 3833180 ATTAGAAAGGACATTTTCGTTCCGTACAAAAGCAGTTTACAACCCGAAGG-CCTTCATCC 3833238 Query 114 TTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCT 173 | ||||| | ||||||| |||| | || |||||| |||| ||||| ||||||||||| Sbjct 3833239 TGCACGCGGCATGGCTGGATCAGGGTTTCCCCCATTGTCCAAAATTCCCCACTGCTGCCT 3833298 Query 174 CCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCC 233 ||||||||||| ||| |||||||||||| ||| ||||| | | |||||||||| | | Sbjct 3833299 CCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAGC 3833358 Query 234 TATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 || |||| |||| ||| || ||| ||| || |||||||||| Sbjct 3833359 TACAGCTCGTCGGCTTGGTAAGCTTTTATCCCACCAACTACCTAAT 3833404 >seq1907 Length=160928 Score = 123 bits (136), Expect = 5e-26 Identities = 194/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 106266 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 106218 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 106217 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 106165 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 106164 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 106105 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 106104 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 106045 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 106044 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 106006 Score = 123 bits (136), Expect = 5e-26 Identities = 194/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 143794 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 143842 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 143843 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 143895 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 143896 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 143955 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 143956 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 144015 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 144016 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 144054 >seq37 Length=24396255 Score = 118 bits (130), Expect = 2e-24 Identities = 193/279 (69%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 11913744 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 11913792 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 11913793 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 11913845 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 11913846 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 11913905 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| | | ||||||| || | ||| || Sbjct 11913906 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTAATCATCCTCTCGGACCAGCTACTGAT 11913965 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 11913966 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 11914004 >seq1906 Length=773279 Score = 116 bits (128), Expect = 8e-24 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 206485 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 206426 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 206425 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 206366 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| || Sbjct 206365 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 206306 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 206305 GCAGGCTCATCAAACAGCG 206287 >seq301 Length=1037459 Score = 116 bits (128), Expect = 8e-24 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 105445 CCTTCTTCACTCACGCAATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 105504 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 105505 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 105564 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| || Sbjct 105565 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 105624 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 105625 GCAGGCTCATCAAACAGCG 105643 >seq51 Length=29360087 Score = 89.7 bits (98), Expect = 1e-15 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || ||| |||||| || ||||| ||||||| |||||||||||||| ||| || Sbjct 7188818 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTACCTCCCGTAGGAGTCTGGGCCT 7188759 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGT 252 ||||||||| ||| ||||| || | || |||| || | ||| ||| | | || ||| Sbjct 7188758 TGTCTCAGTCCCAGTGTGGCTGATCATCATCTCGGACCAGCTACTGATCATCGCCTTGGT 7188699 Query 253 GGGCCGTTACCCCGCCTACTACCTAAT 279 || || || | || |||| ||||| Sbjct 7188698 AAGCTATTGCCTCACCAACTAGCTAAT 7188672 >seq32 Length=19818926 Score = 75.2 bits (82), Expect = 2e-11 Identities = 86/116 (74%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 113 CTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCC 172 || ||||| || | ||| |||| | ||| |||||| || | ||| || |||| | Sbjct 10294984 CTCCACGCGACATTGCTCCATCAGGATTTCGCCCATTGTGAAAAACTCCCCATTGCTATC 10295043 Query 173 TCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||||||||||||||||| |||||||||| | | ||||| || | || ||||||| Sbjct 10295044 TCCCGTAGGAGTTTGGATTGTGTCTCAGTACTAGTGTGGTTGATCATCTTCTCAGA 10295099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068779617984