Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1221 475 1e-131 seq43 428 1e-117 seq32 363 5e-98 seq12 329 1e-87 seq812 159 1e-36 seq40 141 3e-31 seq9 100 9e-19 >seq1221 Length=73062 Score = 475 bits (526), Expect = 1e-131 Identities = 370/432 (86%), Gaps = 8/432 (2%) Strand=Plus/Plus Query 80 AATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9432 AATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG 9491 Query 140 AATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCG 199 |||||||||||||||| |||| |||||| ||||||| ||||||| ||||| ||||||| Sbjct 9492 AATCGAACCCTAATTCTCCGTCACCCGTCAATACCATTGTAGGCCCCTATCGTACCATCA 9551 Query 200 AAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC-AAGGCCATGCGATTCGT 258 ||||||||||||||| |||||||||||| | |||| ||| | | || | |||||| ||| Sbjct 9552 AAAGTTGATAGGGCATAAATTTGAATGATGCTTCGCTGGCACGATGGTCGTGCGATCCGT 9611 Query 259 TAAGTTATTATGAATCACCA-AGGAGC-CCCGAAG--GGCGTTGGTTTTTTATCTAATAA 314 | |||||| |||||||| || || | | | ||| |||| | ||||||||||||| Sbjct 9612 TGAGTTATCATGAATCATCAGAGCAACAGGCAAAGCCCGCGTCGACCTTTTATCTAATAA 9671 Query 315 ATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTT 373 || || ||||||| |||| ||||||||| ||| ||||||||||||||||||| |||||| Sbjct 9672 ATGCATCCCTTCCAAAAGTTGGGGTTTTTTGCACGTATTAGCTCTAGAATTACTACGGTT 9731 Query 374 ATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTT 433 |||| |||| || ||| |||||| |||| ||||||||||||||||||||||| ||||| Sbjct 9732 ATCCGAGTAG-CAGATACAATCAAACAAACTATAACTGATTTAATGAGCCATTCACAGTT 9790 Query 434 TCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATAT 492 |||| | | ||| | | ||||||| ||||||||||||||||||||||||||||||||| Sbjct 9791 TCACAGACTGAATTAGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATAT 9850 Query 493 GACTACTGGCAG 504 |||||||||||| Sbjct 9851 GACTACTGGCAG 9862 >seq43 Length=20304914 Score = 428 bits (474), Expect = 1e-117 Identities = 408/515 (79%), Gaps = 19/515 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| |||| ||||| |||| | |||||||| ||| ||||| Sbjct 8025451 GTACTCATTCCAATTACCAGACTCAAA-GAGCCTGGTATTATTATTTATTATCATTACCT 8025393 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || | |||| |||||||||||||||||| ||| || ||||||||||||||||||| | || Sbjct 8025392 CCTCTTGTCAGGATTGGGTAATTTGCGCACCTACTACCTTCCTTGGATGTGGTAGTCATT 8025333 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||| ||| | | ||||| ||||||| |||| || |||| | ||||||| ||| Sbjct 8025332 TCTCAGGTTCCTTTTTTGGAATTGAACCCTGATTCTTTGTCACCCATCAATACCATAGTA 8025273 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||| |||||||||||||||| |||||||||||| ||||| | Sbjct 8025272 GGCCCTTATCCTACCATTGAAAGTTGATAGGGCATAAATTTGAATGATGTGTCGCCAACA 8025213 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC----- 294 | | || || ||| | | |||||| |||||||| | ||| | | |||| Sbjct 8025212 CGATGGTTGTGTGATCCATCGAGTTATCATGAATCA--TAAGAG---CAATGGGCAAATC 8025158 Query 295 ----GTTGGTTTTTTATCTAATAAATACACCCCTT-CCGAAGTCGGGGTTTTTAGCATGT 349 ||||| |||||| ||||||||| | ||||| ||||||| ||||| | ||| || Sbjct 8025157 CTATGTTGGCCTTTTATGTAATAAATATATCCCTTATAGAAGTCGAGGTTTATGGCACGT 8025098 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAAC 409 || |||||||||||||| | |||||||| |||| || |||||||||| |||| ||| Sbjct 8025097 ATCAGCTCTAGAATTACTATGGTTATCCGAGTAGCAA-ATACTATCAAACAAACTATAGT 8025039 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATG 468 ||||||||||||||||| | ||||||| || | ||| | | ||||||| ||||||||| Sbjct 8025038 TGATTTAATGAGCCATTTGTAGTTTCATAGTCTGAATTAGTTCATACTTACACATGCATG 8024979 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||||||||||||||||||||||||||||||||||| Sbjct 8024978 GCTTAATCTTTGAGACAAGCATATGACTACTGGCA 8024944 >seq32 Length=19818926 Score = 363 bits (402), Expect = 5e-98 Identities = 393/511 (77%), Gaps = 15/511 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| | || ||| ||||| |||| |||||||||||||||||| Sbjct 10359988 GTACTCATTCCAATTACCAAACTGAAA-GAGCCTAGTATTGTTATTTATTGTCACTACCT 10359930 Query 61 CCCC-GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| ||||| |||||||||||||||| ||||| | | || |||||||||| | | Sbjct 10359929 CCCCCGTGTCAGGATTGGGTAATTTGCATGCCTGTTACTTT----GGATGTGGTAATCAT 10359874 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||||||||| | || ||||||| |||||||||| || | |||| ||||||| || Sbjct 10359873 TTCTCAGGCTCCTTTTCTGGAATCGGACCCTAATTCTCCATCACCCACCAATACCATAGT 10359814 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||| |||| |||||||| |||||||||||| || |||||||||||| | || | || Sbjct 10359813 GTGCCCCTATTCTACCATCAAAAGTTGATAGGACATAAATTTGAATGATGCGTCATCAGC 10359754 Query 240 -TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA----AGGAGCCCCGAAGGGC 294 | | |||||||| || | || |||||| |||| ||| || | || | | | Sbjct 10359753 ATAATGGCCATGCAATCCATTGAGTTATCATGATTCATCAGAACAATAGGCAAAACCCAC 10359694 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTA 353 || ||||||||||||||| || ||||||| |||| | |||| | ||||||||| Sbjct 10359693 GTCAACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTTGAAGTTTGTTGCATGTATTG 10359634 Query 354 GCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGAT 413 ||||||| ||||| ||| |||||| |||| || || |||||| |||| |||| ||| Sbjct 10359633 GCTCTAG-ATTACTACGATTATCCGAGTAG-CAGATAGCATCAAACAAACTATAATAGAT 10359576 Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTT 472 |||||||| | |||| ||||||| || || ||| | | ||||||| | ||||| | ||| Sbjct 10359575 TTAATGAGTCTTTCGTAGTTTCATAGTCTAAATTAGTTCATACTTACATATGCACGACTT 10359516 Query 473 AATCTTTGAGACAAGCATATGACTACTGGCA 503 |||||||||| |||||||||||||| ||||| Sbjct 10359515 AATCTTTGAGGCAAGCATATGACTATTGGCA 10359485 >seq12 Length=21026613 Score = 329 bits (364), Expect = 1e-87 Identities = 210/227 (93%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| |||| |||||| |||| |||||||||||||||||| Sbjct 9709892 GTACTCATTCCAATTACCAGACTCAAA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 9709834 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 9709833 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGTCGTT 9709774 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||| ||| Sbjct 9709773 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCAATACCATAGTA 9709714 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 |||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 9709713 GGCCCCTATCCTACCATCGAAAGTTGATAGGTGAGAAATTTGAATGA 9709667 >seq812 Length=26026 Score = 159 bits (176), Expect = 1e-36 Identities = 202/273 (74%), Gaps = 10/273 (4%) Strand=Plus/Minus Query 82 TTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAA 141 ||||||| ||| || ||||| || |||||||||| ||||||||| ||||||||||| || Sbjct 25021 TTTGCGCACCTACTACCTTCTTTCGATGTGGTAGTCGTTTCTCAAGCTCCCTCTCCAAAA 24962 Query 142 TCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAA 201 ||||||||||||| | | | || ||| ||| |||||| |||||||||||||||| Sbjct 24961 TCGAACCCTAATTATGTATCAACGGTCAATATCATAGTAGGCTCCTATCCTACCATCGAA 24902 Query 202 AGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCA---TGCGATTCGT 258 |||||||| ||| |||||||||||| |||| |||| ||| | | | | || | Sbjct 24901 AGTTGATAAAGCAAAAATTTGAATGATGCATCATCGGCACAA--CAAGTGTACAATCTAT 24844 Query 259 TAAGTTATTATGAATCACCA-AGGAGCCCCGAA---GGGCGTTGGTTTTTTATCTAATAA 314 ||||||| |||||||| || || | | || || | | ||||||||||||| Sbjct 24843 CAAGTTATCATGAATCATCATAGCAACGGGCAAATCCTGCATCGACCTTTTATCTAATAA 24784 Query 315 ATACACCCCTTCC-GAAGTCGGGGTTTTTAGCA 346 || || |||||| ||||| ||||| | ||| Sbjct 24783 ATGCATTCCTTCCAAAAGTCAAGGTTTGTTGCA 24751 >seq40 Length=1052295 Score = 141 bits (156), Expect = 3e-31 Identities = 285/412 (69%), Gaps = 32/412 (8%) Strand=Plus/Plus Query 78 GTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC 137 ||||||||| | | || || |||||||||||||||||| | |||| |||||| | |||| Sbjct 285512 GTAATTTGCACACATGTTGTCTTCCTTGGATGTGGTAGTCATTTCCCAGGCTTC-TCTCT 285570 Query 138 GGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCAT 197 | |||| |||| |||||| || || ||| | |||| || |||||| Sbjct 285571 GAAATCAAACCATAATTC-----------TTCAT--CATTTCA--CCACCAT--TACCAT 285613 Query 198 CGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC-TCAAGGCCATGCGATTC 256 ||| ||||||||| | ||||||||||| ||| | || | | || | ||| || | Sbjct 285614 TAAAAATTGATAGGGTAAGAATTTGAATGATACATTGTTGGTATGATGGTCGTGCAATCC 285673 Query 257 GTTAAGTTATTAT--GAATCACCAAGGAGCCCCGAAGGGCGTTGGTT-----TTTTATCT 309 | |||||||||| |||| | || | ||| | ||| | |||||||| Sbjct 285674 ATCAAGTTATTATATGAATTATCATAGCAATAAGAAAAAC-TTGTATCAACCTTTTATCT 285732 Query 310 AATAAATACACCCCTTCCGAAG--TCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACC 367 |||| || || |||| || | |||||| | | || ||||| |||||||||||| Sbjct 285733 AATAGATGCATTCCTTTTAAAAATTGAGGGTTTGTTGAATATATTAACTCTAGAATTACT 285792 Query 368 ACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427 | |||||| || ||||| || ||| || ||| ||| ||| |||||||||| || |||| Sbjct 285793 ATGGTTATTCAAGTAGT-AGATACCATTAAACAAATTATAGCTGATTTAATAAGTCATTT 285851 Query 428 GCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478 |||||||| | | | | | | ||||||| || ||||| ||||||| || Sbjct 285852 ATAGTTTCACAATCTAATCTAGTTCATACTTATACTTGCAT-GCTTAATGTT 285902 >seq9 Length=25021643 Score = 100 bits (110), Expect = 9e-19 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 42 GTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTC 101 || |||||||||||||||||| |||| |||| | ||||||| || ||| | |||| Sbjct 14823855 GTTTTTATTGTCACTACCTCCTTGTGTTAGGATGTGATAATTTGTCCGTCTGTTATCTTC 14823796 Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATT 154 || ||||||| ||| | ||||||| |||||| ||| ||||||||||||||| Sbjct 14823795 CTAGGATGTGATAGTCATTTCTCACACTCCCTATCCAAAATCGAACCCTAATT 14823743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510371196672