Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq74 201 2e-49 seq11 87.8 3e-15 seq8 87.8 3e-15 seq255 78.8 2e-12 seq4 78.8 2e-12 >seq74 Length=251313 Score = 201 bits (222), Expect = 2e-49 Identities = 242/325 (74%), Gaps = 7/325 (2%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTC- 69 ||||| |||||||||| |||||| |||| || ||||||| || ||||||| | | || Sbjct 195243 AGGGGAGTGAAATAGATCCTGAAACCGCATGCATACAAGCAGTGGGAGCCGGCTTAGTCC 195184 Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 |||||| |||| ||||||| |||||| | | ||| ||| | ||| ||| |||||| Sbjct 195183 GGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTA-TATTCAGTAGCAAGGTTAGC 195125 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 || |||| ||||| || |||| |||| ||||| |||||| ||||| ||| Sbjct 195124 CGCA-CAGGGG----AGCCGTAGGGAAACCGAGTCTTAATAGGGCGTTTAGTTGCTGGGT 195070 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 ||||| ||||||| |||||||| ||| ||||||||||||| |||||| | || Sbjct 195069 ATAGACCCGAAACCAGGTGATCTATCCATGAGCAGGTTGAAGGTTGGGTAACACTAACTG 195010 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 |||||||||||| |||||||||| |||||||| | || ||||||||||||| Sbjct 195009 GAGGACCGAACCCACTGTCGTTGAAAAGCCAGGGGATGACTTGTGGATAGGGGTGAAAGG 194950 Query 310 CCAATCAAACTGGGAAATAGCTCGT 334 | ||||||||| || |||||| || Sbjct 194949 CTAATCAAACTTGGTGATAGCTGGT 194925 >seq11 Length=20703932 Score = 87.8 bits (96), Expect = 3e-15 Identities = 207/308 (67%), Gaps = 5/308 (2%) Strand=Plus/Plus Query 12 GGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71 |||| |||||||||| | |||| ||| || ||||| || |||| || | Sbjct 12018203 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGACCAGGGCTC 12018262 Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| ||| | | || || ||||||||| Sbjct 12018263 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTTA-TAGGCAGTGGCTTGGTTAAGGG 12018321 Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191 | ||| ||||| || ||||||||| ||| | ||||| | || || | Sbjct 12018322 AACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTAT 12018377 Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGA 251 ||| |||| | |||||||| ||| || |||| ||||| ||| | | |||| Sbjct 12018378 GGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGA 12018437 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 || |||||||| | |||||| | | ||||||| | | || ||||||||||| ||| Sbjct 12018438 GGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 12018497 Query 312 AATCAAAC 319 | || ||| Sbjct 12018498 ACTCGAAC 12018505 >seq8 Length=23350829 Score = 87.8 bits (96), Expect = 3e-15 Identities = 207/308 (67%), Gaps = 5/308 (2%) Strand=Plus/Minus Query 12 GGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71 |||| |||||||||| | |||| ||| || ||||| || |||| || | Sbjct 11390516 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGACCAGGGCTC 11390457 Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| ||| | | || || ||||||||| Sbjct 11390456 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTTA-TAGGCAGTGGCTTGGTTAAGGG 11390398 Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191 | ||| ||||| || ||||||||| ||| | ||||| | || || | Sbjct 11390397 AACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTAT 11390342 Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGA 251 ||| |||| | |||||||| ||| || |||| ||||| ||| | | |||| Sbjct 11390341 GGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGA 11390282 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 || |||||||| | |||||| | | ||||||| | | || ||||||||||| ||| Sbjct 11390281 GGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 11390222 Query 312 AATCAAAC 319 | || ||| Sbjct 11390221 ACTCGAAC 11390214 >seq255 Length=128618 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 5750 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 5691 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 5690 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 5631 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 5630 AACCAAGATCGGATATAGCTGGT 5608 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 7372 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 7313 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 7312 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 7253 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 7252 AACCAAGATCGGATATAGCTGGT 7230 >seq4 Length=30445767 Score = 78.8 bits (86), Expect = 2e-12 Identities = 166/242 (69%), Gaps = 7/242 (3%) Strand=Plus/Minus Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||| | ||| ||| | | || || ||||||||| Sbjct 13711817 TGACCGCGTGCCTGTTGAAGAATGAGGCGGCGACTTA-TAGGCAGTGGCTTGGTTAAGGG 13711759 Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC-GAGTTGGTGGCGC 190 | ||| ||||| || ||||||||| ||| | ||||| | || ||| | | Sbjct 13711758 AACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATTGACCTGGGTGATC 13711702 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 || | |||| | |||||||| ||| || |||| ||||| ||| | | | ||| Sbjct 13711701 TA--CCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTTAGTGG 13711644 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| |||||||| | |||||| | | ||||||| | | || ||||||||||| || Sbjct 13711643 AGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGC 13711584 Query 311 CA 312 || Sbjct 13711583 CA 13711582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972753412608