Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq9 201 9e-47 >seq9 Length=25348792 Score = 201 bits (222), Expect = 9e-47 Identities = 560/842 (67%), Gaps = 18/842 (2%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || || || ||||||||||| | ||||||||||| | || | || Sbjct 24570803 ATGTACAAGAAAGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTCGACCTCTCTCAGGAT 24570862 Query 61156 ATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 | | ||||||| || | || || | || |||||| |||||| | || Sbjct 24570863 GTTCGTCACTGGGAAAACCTAACCCCCGACGAGAAGCACTTCATTTCGCATGTGCTCGCT 24570922 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 |||||||| || || ||||| ||||| |||||| | | | ||| | ||||| Sbjct 24570923 TTCTTTGCTGCCTCAGACGGCATCGTTTTGGAGAATCTCGCCGGGAGGTTCATGAAGGAG 24570982 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || || || | ||||| || |||||| ||||||||||||||||| |||||| ||||| Sbjct 24570983 GTTCAGGTCGCAGAGGCTCGCGCTTTCTATGGCTTCCAGATTGCCATAGAGAATATCCAC 24571042 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCG-GAACGTGAA- 61392 || || ||||| || | | |||| || || |||| || ||| || ||| ||| Sbjct 24571043 TCCGAAATGTATAGCCTCTTGCTCGAAACCTATATCAAAGACCCGGTCGAGAA---GAAC 24571099 Query 61393 CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTC 61452 || | ||| ||||||||||||| | || ||| ||| || || |||||| || Sbjct 24571100 CGGCTTTTCCATGCCATCGAGACCGTCCCTTGTGTGGCCAAGAAGGCCGAATGGGCCCTC 24571159 Query 61453 AATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 |||||| | | || || | | || | || || ||| | || || || || Sbjct 24571160 CGGTGGATCGACGG--CACCGAAT-CGTTCGCGGAGCGTTTGGTTGCTTTCGCTTGCGTG 24571216 Query 61513 GAGGGTGTATT-TTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 ||||| | || ||| | ||| | | || ||| || |||||| ||||||| || || | Sbjct 24571217 GAGGGGATTTTCTTTTCGGGGAGCTTCTG-CGCGATATTTTGGCTGAAGAAGCGCGGGTT 24571275 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 |||||||| || || ||| || |||||||| || || |||||||| |||| || || Sbjct 24571276 GATGCCCGGGCTCACTTTCTCGAACGAGTTGATCTCGCGAGACGAGGGTTTGCACTGCGA 24571335 Query 61632 TTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGG 61691 || || |||| || | ||||| || ||| | | ||||| || || Sbjct 24571336 CTTCGCGTGCTTGC--TTTACACGCT-GATGAGGAAGAAGCTGAGCGAGGAACGAGTTAA 24571392 Query 61692 TGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGT 61751 | || ||||| || ||||| ||| || || || || ||||| ||| |||| Sbjct 24571393 GGGAATCGTTCGCGACGCGGTTGATATAGAGAGAGAGTTCGTGTGCGACGCGTTG-CCGT 24571451 Query 61752 CT-CACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACC 61810 | | || | || ||||| ||| || ||| ||||| ||||| ||||| || || Sbjct 24571452 GTGCTCTGGTGGGGATGAACGGTGATCTGATGAGCCAGTACATTGAGTTTGTGGCTGATA 24571511 Query 61811 GTCTGTTGGTCGATTT-GGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTC 61869 | || ||| | ||| ||||| | | ||| || ||| | ||||||||||||| Sbjct 24571512 GGTTGCTGGGTGCTTTGGGGTACG-GGAAGATTTACAATGTTCAGAACCCATTTGATTGG 24571570 Query 61870 ATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTAT 61929 ||||| |||| ||| || | || ||||| ||||| |||||||| | || || || ||| Sbjct 24571571 ATGGAGCTGATATCGTTGCAGGGGAAGACAAATTTCTTCGAGAAGAGGGTCGGAGAGTAT 24571630 Query 61930 CA 61931 || Sbjct 24571631 CA 24571632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397544795570960