Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= AAMG01001946.1
Length=179
Score E
Sequences producing significant alignments: (Bits) Value
seq50534 87.8 2e-15
seq36852 87.8 2e-15
seq27496 87.8 2e-15
seq27149 87.8 2e-15
seq8657 87.8 2e-15
seq4564 87.8 2e-15
seq27980 86.0 6e-15
seq58417 75.2 1e-11
seq35003 75.2 1e-11
seq20170 75.2 1e-11
seq19981 75.2 1e-11
seq72 75.2 1e-11
>seq50534
Length=30938
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| || | ||| |||||||||| | || |||||| |||
Sbjct 15196 GTTGAGCGATGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCTCTG 15137
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
||||| || | ||| |||||||||| ||| |||| |||||||
Sbjct 15136 CTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 15091
>seq36852
Length=132806
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| || | ||| |||||||||| | || |||||| |||
Sbjct 109384 GTTGAGCGATGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCTCTG 109443
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
||||| || | ||| |||||||||| ||| |||| |||||||
Sbjct 109444 CTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 109489
>seq27496
Length=2925
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| || | ||| |||||||||| | || |||||| |||
Sbjct 1581 GTTGAGCGATGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCTCTG 1640
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
||||| || | ||| |||||||||| ||| |||| |||||||
Sbjct 1641 CTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 1686
>seq27149
Length=27345
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| || | ||| |||||||||| | || |||||| |||
Sbjct 13913 GTTGAGCGATGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCTCTG 13854
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
||||| || | ||| |||||||||| ||| |||| |||||||
Sbjct 13853 CTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 13808
>seq8657
Length=11293
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| || | ||| |||||||||| | || |||||| |||
Sbjct 10220 GTTGAGCGATGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCTCTG 10161
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
||||| || | ||| |||||||||| ||| |||| |||||||
Sbjct 10160 CTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 10115
>seq4564
Length=10097
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| || | ||| |||||||||| | || |||||| |||
Sbjct 9325 GTTGAGCGATGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCTCTG 9266
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
||||| || | ||| |||||||||| ||| |||| |||||||
Sbjct 9265 CTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 9220
>seq27980
Length=4811
Score = 86.0 bits (94), Expect = 6e-15
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| || | ||| |||||||||| | || |||||| |||
Sbjct 852 GTTGAGCGATGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCTCTG 793
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCAC 128
||||| || | ||| |||||||||| ||| |||| ||||||
Sbjct 792 CTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCAC 748
>seq58417
Length=115334
Score = 75.2 bits (82), Expect = 1e-11
Identities = 77/101 (76%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 33394 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 33453
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATT 124
|||| | ||| |||| |||||| || |||||| |||||
Sbjct 33454 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATT 33494
>seq35003
Length=974210
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 618207 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 618148
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 618147 TTCGACCAGTCGGTCTCACAGTCAGGCATGCTTATACCATTACGCTCAC 618099
>seq20170
Length=133519
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 54728 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 54669
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| | |||||| ||||| |||| ||
Sbjct 54668 TTCGACCAGTCGGTCTCACAGTCAGGAAGGCTTATACCATTACACTCAC 54620
>seq19981
Length=8385
Score = 75.2 bits (82), Expect = 1e-11
Identities = 77/101 (76%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 222 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 163
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATT 124
|||| | ||| |||| |||||| || |||||| |||||
Sbjct 162 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATT 122
>seq72
Length=643555
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 549881 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 549940
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 549941 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 549989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 473285547656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |