Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq50534 87.8 2e-15 seq36852 87.8 2e-15 seq27496 87.8 2e-15 seq27149 87.8 2e-15 seq8657 87.8 2e-15 seq4564 87.8 2e-15 seq27980 86.0 6e-15 seq58417 75.2 1e-11 seq35003 75.2 1e-11 seq20170 75.2 1e-11 seq19981 75.2 1e-11 seq72 75.2 1e-11 >seq50534 Length=30938 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| || | ||| |||||||||| | || |||||| ||| Sbjct 15196 GTTGAGCGATGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCTCTG 15137 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || | ||| |||||||||| ||| |||| ||||||| Sbjct 15136 CTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 15091 >seq36852 Length=132806 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| || | ||| |||||||||| | || |||||| ||| Sbjct 109384 GTTGAGCGATGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCTCTG 109443 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || | ||| |||||||||| ||| |||| ||||||| Sbjct 109444 CTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 109489 >seq27496 Length=2925 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| || | ||| |||||||||| | || |||||| ||| Sbjct 1581 GTTGAGCGATGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCTCTG 1640 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || | ||| |||||||||| ||| |||| ||||||| Sbjct 1641 CTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 1686 >seq27149 Length=27345 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| || | ||| |||||||||| | || |||||| ||| Sbjct 13913 GTTGAGCGATGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCTCTG 13854 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || | ||| |||||||||| ||| |||| ||||||| Sbjct 13853 CTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 13808 >seq8657 Length=11293 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| || | ||| |||||||||| | || |||||| ||| Sbjct 10220 GTTGAGCGATGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCTCTG 10161 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || | ||| |||||||||| ||| |||| ||||||| Sbjct 10160 CTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 10115 >seq4564 Length=10097 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| || | ||| |||||||||| | || |||||| ||| Sbjct 9325 GTTGAGCGATGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCTCTG 9266 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || | ||| |||||||||| ||| |||| ||||||| Sbjct 9265 CTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 9220 >seq27980 Length=4811 Score = 86.0 bits (94), Expect = 6e-15 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| || | ||| |||||||||| | || |||||| ||| Sbjct 852 GTTGAGCGATGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCTCTG 793 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCAC 128 ||||| || | ||| |||||||||| ||| |||| |||||| Sbjct 792 CTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCAC 748 >seq58417 Length=115334 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/101 (76%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||| | | || ||||||||||||| || |||||| ||| Sbjct 33394 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 33453 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATT 124 |||| | ||| |||| |||||| || |||||| ||||| Sbjct 33454 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATT 33494 >seq35003 Length=974210 Score = 75.2 bits (82), Expect = 1e-11 Identities = 82/109 (75%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||| | | || ||||||||||||| || |||||| ||| Sbjct 618207 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 618148 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132 |||| | ||| |||| |||||| || |||||| ||||| | || || Sbjct 618147 TTCGACCAGTCGGTCTCACAGTCAGGCATGCTTATACCATTACGCTCAC 618099 >seq20170 Length=133519 Score = 75.2 bits (82), Expect = 1e-11 Identities = 82/109 (75%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||| | | || ||||||||||||| || |||||| ||| Sbjct 54728 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 54669 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132 |||| | ||| |||| |||||| | |||||| ||||| |||| || Sbjct 54668 TTCGACCAGTCGGTCTCACAGTCAGGAAGGCTTATACCATTACACTCAC 54620 >seq19981 Length=8385 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/101 (76%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||| | | || ||||||||||||| || |||||| ||| Sbjct 222 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 163 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATT 124 |||| | ||| |||| |||||| || |||||| ||||| Sbjct 162 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATT 122 >seq72 Length=643555 Score = 75.2 bits (82), Expect = 1e-11 Identities = 82/109 (75%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||| | | || ||||||||||||| || |||||| ||| Sbjct 549881 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 549940 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132 |||| | ||| |||| |||||| || |||||| ||||| | || || Sbjct 549941 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 549989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473285547656