Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025. 1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq17655 132 4e-26 >seq17655 Length=1090806 Score = 132 bits (146), Expect = 4e-26 Identities = 543/845 (64%), Gaps = 27/845 (3%) Strand=Plus/Plus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || ||||||||||| | |||||||| || | ||| ||| | Sbjct 172013 TACAAGAAGGCGGTGGCGTCCTTCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCG 172072 Query 61159 AATGACTGGGAGCGTT---TATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 ||||||| | || | || || | || ||||| || ||| | || Sbjct 172073 CGCCACTGGGACACCACCCTCTCCAACGACGAGCGCCACTTCATCTCCCACGTGCTCGCC 172132 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| ||||| || ||||| ||||| ||||| | | ||| | || Sbjct 172133 TTCTTCGCCGCCTCCGACGGCATCGTGCTGGAGAACCTCGCCTCCAGGTTCATGTCCGAC 172192 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 ||||| || | ||||| | ||||||||||||||||| ||||| ||||| ||||| Sbjct 172193 GTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCAC 172252 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAACG 61394 || ||||||||| | |||||||| || |||||| | || | | || | | || || Sbjct 172253 TCCGAGATGTACTCCCTGCTCATCGAGACCTACATCCGCGACGACGTCGAGAAG-GACCG 172311 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 | ||| |||||||| || || || || ||| || || || || |||||| || Sbjct 172312 CCTCTTCCGCGCCATCGACACCATCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCCTCCG 172371 Query 61455 TTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 |||||| || ||| | || | || || | | || || || ||| Sbjct 172372 CTGGATC-----GACGGCGGGGAGCGCTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTC 172426 Query 61513 GAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTT 61572 ||||| | || ||| || || || ||| ||||| ||| | ||||| || || || Sbjct 172427 GAGGGCATCTTCTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTC 172486 Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGAT 61632 ||||| || || |||||| ||| ||| | || || |||||||||||| |||| || || Sbjct 172487 ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGAC 172546 Query 61633 TTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTC-CGTCGGAGGAG---CGTGT 61688 || || | || || ||| ||| | | || | | ||| ||| || || Sbjct 172547 TTCGC---CTGCCTCCTC-TACGACATCCTGCG---CGGCAAGCTGGACGAGTCCCGCGT 172599 Query 61689 GGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTG 61746 ||||| || ||||| || ||||| ||| || |||| ||||| || Sbjct 172600 CTTCGAGATCGTCTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTG--CGACGCGCTG 172657 Query 61747 CCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCC 61806 ||| | | ||| |||||||||| | | || ||| ||||| || || || || ||| Sbjct 172658 CCCTGCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTGGCC 172717 Query 61807 GACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGAT 61866 ||||| ||| | | | |||| ||| | | || || | | ||||| || || Sbjct 172718 GACCGCCTGCTCATGGCGCTGGGCTGCAAGAAGCTGTACAACGCCACCAACCCGTTCGAC 172777 Query 61867 TTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGAC 61926 | ||||| | || |||||| | |||||||| || || |||||||| || || ||||| Sbjct 172778 TGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAG 172837 Query 61927 TATCA 61931 || || Sbjct 172838 TACCA 172842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397235908716320