Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aegilops_20tauschii_20subsp._20tauschii_20[refseq_20GCF_5F001957025.
1_202017-01-19] 68,538 sequences; 4,327,321,625 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq17655 132 4e-26
>seq17655
Length=1090806
Score = 132 bits (146), Expect = 4e-26
Identities = 543/845 (64%), Gaps = 27/845 (3%)
Strand=Plus/Plus
Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158
||||| ||||||| || ||||||||||| | |||||||| || | ||| ||| |
Sbjct 172013 TACAAGAAGGCGGTGGCGTCCTTCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCG 172072
Query 61159 AATGACTGGGAGCGTT---TATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215
||||||| | || | || || | || ||||| || ||| | ||
Sbjct 172073 CGCCACTGGGACACCACCCTCTCCAACGACGAGCGCCACTTCATCTCCCACGTGCTCGCC 172132
Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275
||||| ||||| || ||||| ||||| ||||| | | ||| | ||
Sbjct 172133 TTCTTCGCCGCCTCCGACGGCATCGTGCTGGAGAACCTCGCCTCCAGGTTCATGTCCGAC 172192
Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335
||||| || | ||||| | ||||||||||||||||| ||||| ||||| |||||
Sbjct 172193 GTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCAC 172252
Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAACG 61394
|| ||||||||| | |||||||| || |||||| | || | | || | | || ||
Sbjct 172253 TCCGAGATGTACTCCCTGCTCATCGAGACCTACATCCGCGACGACGTCGAGAAG-GACCG 172311
Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454
| ||| |||||||| || || || || ||| || || || || |||||| ||
Sbjct 172312 CCTCTTCCGCGCCATCGACACCATCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCCTCCG 172371
Query 61455 TTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512
|||||| || ||| | || | || || | | || || || |||
Sbjct 172372 CTGGATC-----GACGGCGGGGAGCGCTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTC 172426
Query 61513 GAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTT 61572
||||| | || ||| || || || ||| ||||| ||| | ||||| || || ||
Sbjct 172427 GAGGGCATCTTCTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTC 172486
Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGAT 61632
||||| || || |||||| ||| ||| | || || |||||||||||| |||| || ||
Sbjct 172487 ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGAC 172546
Query 61633 TTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTC-CGTCGGAGGAG---CGTGT 61688
|| || | || || ||| ||| | | || | | ||| ||| || ||
Sbjct 172547 TTCGC---CTGCCTCCTC-TACGACATCCTGCG---CGGCAAGCTGGACGAGTCCCGCGT 172599
Query 61689 GGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTG 61746
||||| || ||||| || ||||| ||| || |||| ||||| ||
Sbjct 172600 CTTCGAGATCGTCTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTG--CGACGCGCTG 172657
Query 61747 CCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCC 61806
||| | | ||| |||||||||| | | || ||| ||||| || || || || |||
Sbjct 172658 CCCTGCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTGGCC 172717
Query 61807 GACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGAT 61866
||||| ||| | | | |||| ||| | | || || | | ||||| || ||
Sbjct 172718 GACCGCCTGCTCATGGCGCTGGGCTGCAAGAAGCTGTACAACGCCACCAACCCGTTCGAC 172777
Query 61867 TTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGAC 61926
| ||||| | || |||||| | |||||||| || || |||||||| || || |||||
Sbjct 172778 TGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAG 172837
Query 61927 TATCA 61931
|| ||
Sbjct 172838 TACCA 172842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397235908716320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |