Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq23 576 4e-162 seq19 134 5e-29 seq2988 78.8 3e-12 seq918 78.8 3e-12 seq4 78.8 3e-12 >seq23 Length=7979763 Score = 576 bits (638), Expect = 4e-162 Identities = 390/434 (90%), Gaps = 11/434 (3%) Strand=Plus/Plus Query 111 GTCATCAACCCGGATCGGCCCGCGAAGGAC----CTTAACGCCAGAAAATGGTCGGTGAA 166 ||| || ||||||||||||||| ||| | ||| ||||||| || || || Sbjct 6794323 GTCTTCCGCCCGGATCGGCCCGCCGAGGGCGGGCCTTGTGGCCAGAAGGAGG--GGCGAG 6794380 Query 167 GACCAG-TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTG 225 | || | ||||| ||| || ||||||||| |||| ||| ||||||||||||||| | Sbjct 6794381 GCCCCGCTTCCGGATCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACCGG 6794440 Query 226 CGCCG----AAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGAC 281 ||||| | |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 6794441 CGCCGGCGGAGCCGGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGAC 6794500 Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6794501 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 6794560 Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401 ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 6794561 CTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 6794620 Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCG 461 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6794621 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCG 6794680 Query 462 TTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6794681 TTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 6794740 Query 522 ATTGCGTCAACATC 535 ||||||||| |||| Sbjct 6794741 ATTGCGTCAGCATC 6794754 >seq19 Length=10815949 Score = 134 bits (148), Expect = 5e-29 Identities = 152/199 (76%), Gaps = 11/199 (6%) Strand=Plus/Plus Query 208 GTAGTGGTATTTCACTTGCGCC----GAAACGGCTCCCACTTATTCTACACCTCTCAAGT 263 || |||||||||||| || | || | ||| |||||| ||||||||||||| || Sbjct 576146 GTGGTGGTATTTCACCGACGGCAGTGGAGCCAGCTGTCACTTACTCTACACCTCTCAGGT 576205 Query 264 CATTTCACAAAGTCGGACTAG----AGTCAAGCTCAACAGGG-TCTTCTTTCCCCGCTGA 318 ||||| ||||||| ||||||| ||||||| |||||| |||||||| | || | Sbjct 576206 CATTT-ACAAAGTTGGACTAGCTAGAGTCAAGTTCAACAAAAATCTTCTTTTTCAACTAA 576264 Query 319 TTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGT-GGG 377 ||||||||| |||||| ||||||||||||||| | | |||||| || ||| ||| Sbjct 576265 TTCCGCCAATCCCGTTTTCTTGGCTGTGGTTTCACCAAATAGTATATGTGGATAGTAAAA 576324 Query 378 AATCTCGTTAATCCATTCA 396 ||||| ||||||||||||| Sbjct 576325 AATCTAGTTAATCCATTCA 576343 Score = 132 bits (146), Expect = 2e-28 Identities = 131/166 (79%), Gaps = 5/166 (3%) Strand=Plus/Plus Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 ||||||||| |||||||| || ||| | ||||||||||||||||||||||| || | | Sbjct 547616 CTTATTCTATACCTCTCAGATCCTTT-ATAAAGTCGGACTAGAGTCAAGCTCG-CAAGAT 547673 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGT---TCCCTTGGCTGTGGTTTCGCTAGATA 359 ||||||| ||||| |||||||||| ||| | ||||| ||||||||| ||| ||| Sbjct 547674 CTTCTTTTTCCGCTAATTCCGCCAAACCCATAATTCCCTCTTATGTGGTTTCACTAAATA 547733 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 ||||| | |||| |||||||||||| |||| |||| ||||| Sbjct 547734 GTAGACGTGAGGAGTGAAAATCTCGTTAATTCATTTATGCACGTCA 547779 Score = 98.7 bits (108), Expect = 3e-18 Identities = 106/140 (76%), Gaps = 8/140 (6%) Strand=Plus/Plus Query 270 ACAAAGTCGGACTAG-------AGTCAAGCTCAAC-AGGGTCTTCTTTCCCCGCTGATTC 321 ||||||| ||||||| | ||||| ||||| | |||||||| | ||| |||| Sbjct 577434 ACAAAGTTGGACTAGCTAGAGTACTCAAGTTCAACGAAAATCTTCTTTTTCAGCTAATTC 577493 Query 322 CGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATC 381 |||||| ||||| ||||||||||||||| | | |||||| || ||| || |||| Sbjct 577494 CGCCAATTCCGTTTTCTTGGCTGTGGTTTCACCAAATAGTATATGTGGATGGTAAAAATC 577553 Query 382 TCGTTAATCCATTCATGCGC 401 | |||||||||||||||||| Sbjct 577554 TAGTTAATCCATTCATGCGC 577573 >seq2988 Length=69904 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 59096 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 59037 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 59036 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 58991 >seq918 Length=372633 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 60459 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 60518 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 60519 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 60564 >seq4 Length=15584765 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 15038066 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 15038125 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 15038126 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 15038171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635148834592