Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1452 446 5e-123 seq5 360 6e-97 seq11 228 2e-57 >seq1452 Length=10809 Score = 446 bits (494), Expect = 5e-123 Identities = 337/390 (86%), Gaps = 10/390 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||||| || | |||| |||| |||||||||||||||||| Sbjct 389 GTACTCATTCCAATTACCAGACCCGAAGG-GCCCGGTATTGTTATTTATTGTCACTACCT 331 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 330 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 271 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 270 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 211 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 210 GGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 151 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCC----CGA-AGGGC 294 | |||||| |||||| ||| |||||| |||||||| | || | | ||| || Sbjct 150 CGAAGGCCGTGCGATCCGTCGAGTTATCATGAATCATC--GGTTCGCGGGGCGAGCCCGC 93 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTA 353 || || ||||||||||||||| | ||||||| ||||||||||||| | ||| |||||| Sbjct 92 GTCGGCCTTTTATCTAATAAATGCGTCCCTTCCGGAAGTCGGGGTTTGTTGCACGTATTA 33 Query 354 GCTCTAGAATTACCACGGTTATCCATGTAG 383 ||||||||||||| |||||||||| |||| Sbjct 32 GCTCTAGAATTACTACGGTTATCCGAGTAG 3 >seq5 Length=15024279 Score = 360 bits (398), Expect = 6e-97 Identities = 391/505 (77%), Gaps = 18/505 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||| ||||||||||||| |||| || | ||| |||| |||||||||||| |||||| Sbjct 9772254 GTATTCATTCCAATTACTTAACCCGAAGG-GCCAAGTATTGGTATTTATTGTCGCTACCT 9772312 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| ||||||||||||||| | | | |||| ||||||| || ||||| ||| | Sbjct 9772313 CCCCGTGTCTAGATTGGGTAATTTGCACACTTTCTGCTTTCCTTGAATATGGTAACCG-T 9772371 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||| |||||||| ||| |||| ||| | | |||| | | |||||| |||||||| Sbjct 9772372 TCTTAGGCTCCCCCTCTAGAATTGAATCTTTATTCTTCATCACCCGTCACCACCATGGTC 9772431 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATC-GCCGGC 239 |||| |||||||||||| |||| |||||||||| |||||| |||| |||| || | Sbjct 9772432 GGCCCCTATCCTACCATTAAAAGATGATAGGGCATAAATTTTAATGCGTCATCAGCACG- 9772490 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG--AAGGGCGTT 297 || ||||||||||| | ||||||| |||||||| | || | | || | | Sbjct 9772491 --AACGCCATGCGATTTATCAAGTTATCATGAATCATC--GGTTCGTGGGCAAAGCC--- 9772543 Query 298 GGTTTTTTATCTAATAAATACACCCCTTC-CGAAGTCGGGGTTTTTAGCATGTATTAGCT 356 |||||||||||||| || |||| | ||||||| ||||| | |||||||||| || Sbjct 9772544 CACCCTTTATCTAATAAATGCATCCCTACTGGAAGTCGTGGTTTGTTGCATGTATTAACT 9772603 Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416 |||||||||| ||| |||||| |||| ||||||||| ||| |||| |||||| ||||| Sbjct 9772604 CTAGAATTACTACGCTTATCCGAGTAG-CAGGTACTATTAAACAAACTATAACTAATTTA 9772662 Query 417 ATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAAT 475 |||||||||| ||||||||| || || ||| || ||| ||| |||| ||||| ||| Sbjct 9772663 ATGAGCCATTTGCAGTTTCATAGTCTAAATTAATTCATA-TTACACAT-TATGGCATAAA 9772720 Query 476 CTTTGAGACAAGCATATGACTACTG 500 ||||||||||||||||||||| ||| Sbjct 9772721 CTTTGAGACAAGCATATGACTGCTG 9772745 >seq11 Length=13096665 Score = 228 bits (252), Expect = 2e-57 Identities = 176/205 (86%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 302 TTTTATCTAATAAATACACCCCTTCCG-AAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||| | |||||||| ||||| ||||| | | | ||||||||||||| Sbjct 7479614 TTTTATCTAATAAATGCGTCCCTTCCGGAAGTCAAGGTTTGTTGTACGTATTAGCTCTAG 7479555 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||| ||||||||| |||| | ||||| |||||| ||| |||||||||||||||| Sbjct 7479554 AATTACTACGGTTATCTGAGTAGCA-GGTACCATCAAACAAATTATAACTGATTTAATGA 7479496 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTT 479 ||||||||||||||||| || | | | || ||||||| |||||||||||||||||||| Sbjct 7479495 GCCATTCGCAGTTTCACAGTCTGAAGTAGTTCATACTTACACATGCATGGCTTAATCTTT 7479436 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| Sbjct 7479435 GAGACAAGCATATGACTACTGGCAG 7479411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510352739584