Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq10 96.9 4e-18 seq5 96.9 4e-18 seq1 96.9 4e-18 seq8 93.3 4e-17 seq7 87.8 2e-15 seq9 78.8 1e-12 >seq10 Length=73452336 Score = 96.9 bits (106), Expect = 4e-18 Identities = 123/166 (74%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| ||| || |||| ||| || ||| || | | | |||| Sbjct 64710385 AAACCGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGACAA-CTCTCTCTAAG 64710443 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| || || Sbjct 64710444 GAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GGGGG 64710501 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 64710502 TCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 64710547 >seq5 Length=131469567 Score = 96.9 bits (106), Expect = 4e-18 Identities = 123/166 (74%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| ||| || |||| ||| || ||| || | | | |||| Sbjct 34684331 AAACCGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGACAA-CTCTCTCTAAG 34684389 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| || || Sbjct 34684390 GAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GGGGG 34684447 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 34684448 TCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 34684493 >seq1 Length=132393784 Score = 96.9 bits (106), Expect = 4e-18 Identities = 123/166 (74%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| ||| || |||| ||| || ||| || | | | |||| Sbjct 54559917 AAACCGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGACAA-CTCTCTCTAAG 54559975 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| || || Sbjct 54559976 GAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GGGGG 54560033 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 54560034 TCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 54560079 >seq8 Length=131339754 Score = 93.3 bits (102), Expect = 4e-17 Identities = 120/163 (74%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAA-TCACGGTTAAG 83 |||| |||||| |||| ||| || |||| ||| || ||| || || | |||| Sbjct 18253572 AAACCGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGACAACTCTC---TAAG 18253516 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | || |||||||||||| || |||| ||| | || ||| || || Sbjct 18253515 GAACTCGGCAAAATAGCCTCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GGGGG 18253458 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGG 186 ||||| || ||| || ||| |||||||| |||||||||||| Sbjct 18253457 TCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGG 18253415 >seq7 Length=151357931 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||||| || ||| | Sbjct 98029340 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTACTCACAAA--G 98029397 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACA 184 | || ||||| || ||| | ||| |||||||| |||||||||| Sbjct 98029398 GGGGTCGCAGTGACCAGGCTCGGGCGACTGTTTACCAAAAACACA 98029442 >seq9 Length=68543460 Score = 78.8 bits (86), Expect = 1e-12 Identities = 89/117 (76%), Gaps = 3/117 (3%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| || ||| | || |||||||||||| || |||| ||| | || ||| | Sbjct 19591897 TAAGGAACTCGGAAAAATAGCCTCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 19591840 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | || ||||| || ||| | | |||||||||| |||||||||||| || ||| || Sbjct 19591839 GGGGTCGCAGTGACCAGG-CACGACAACTGTTTACCAAAAACACAGGTCTCTGCAAA 19591784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531139318368