Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq5 235 1e-59 seq1 235 1e-59 seq10 201 3e-49 seq2 158 3e-36 seq652 98.7 2e-18 seq6 82.4 2e-13 >seq5 Length=131469567 Score = 235 bits (260), Expect = 1e-59 Identities = 310/414 (75%), Gaps = 13/414 (3%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 34683468 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 34683412 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 34683411 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 34683356 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | ||||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 34683355 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 34683298 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || | | Sbjct 34683297 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCACATT 34683239 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 ||||||||||||| || ||||||||| | ||||||||||||||| | ||||| Sbjct 34683238 CTCCTCCCACTGCTTGGGAGCTCACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGT 34683180 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 ||||||| ||||||||||||||||||| ||| |||||||||| ||| |||||||||||| Sbjct 34683179 TCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCT 34683120 Query 367 TGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 || | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 34683119 TGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 34683066 >seq1 Length=132393784 Score = 235 bits (260), Expect = 1e-59 Identities = 310/414 (75%), Gaps = 13/414 (3%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 54559054 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 54558998 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 54558997 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 54558942 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | ||||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 54558941 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 54558884 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || | | Sbjct 54558883 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCACATT 54558825 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 ||||||||||||| || ||||||||| | ||||||||||||||| | ||||| Sbjct 54558824 CTCCTCCCACTGCTTGGGAGCTCACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGT 54558766 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 ||||||| ||||||||||||||||||| ||| |||||||||| ||| |||||||||||| Sbjct 54558765 TCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCT 54558706 Query 367 TGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 || | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 54558705 TGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 54558652 >seq10 Length=73452336 Score = 201 bits (222), Expect = 3e-49 Identities = 259/342 (76%), Gaps = 13/342 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 64709522 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 64709466 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 64709465 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 64709410 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | ||||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 64709409 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 64709352 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || | | Sbjct 64709351 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCACATT 64709293 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 ||||||||||||| || ||||||||| | ||||||||||||||| | ||||| Sbjct 64709292 CTCCTCCCACTGCTTGGGAGCTCACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGT 64709234 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCA 348 ||||||| ||||||||||||||||||| ||| |||||||||| Sbjct 64709233 TCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCA 64709192 >seq2 Length=84732013 Score = 158 bits (174), Expect = 3e-36 Identities = 167/219 (76%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 202 GTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTT 261 ||||| ||| |||| | ||| ||| |||| |||| | || | | |||||||||||| Sbjct 46947038 GTCGCCGACTCATTCTTCAACAGGCACGCGGTCAGAGATCACATTCTCCTCCCACTGCTT 46947097 Query 262 GTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCC 321 | || ||||||||| | ||||||||||||||| | |||||| ||||| ||||||| Sbjct 46947098 GGGAGCTCACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTATTTTCACCTTTCC 46947156 Query 322 CTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCC 381 |||||||||||| ||| |||||||||| ||| |||||||||||||| | | |||||| Sbjct 46947157 CTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTT 46947216 Query 382 CCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | ||||| || || | ||||| || | ||||||| Sbjct 46947217 GCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 46947255 Score = 127 bits (140), Expect = 5e-27 Identities = 129/167 (77%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 227 ACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTAT 286 |||| |||| | |||| | |||||| | |||| || |||| |||| | ||||| Sbjct 14900288 ACGCGGTCAGAGATCAAATTCTCCTCCCATTTCTTGGGAGCTCACGGCTTCATGTTCTAT 14900229 Query 287 TTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGT 346 |||||||| || |||||||||||| ||||||||||||||||||| ||| |||||||| Sbjct 14900228 TTCACTCC--TCATGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGT 14900171 Query 347 CAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGAC 393 || ||| | |||||||||||| | | |||| ||||| ||||| || Sbjct 14900170 CACCCAGGATTATTTAGCCTTGCAAGCTGGTTCCCCCTGATTCACAC 14900124 >seq652 Length=124447 Score = 98.7 bits (108), Expect = 2e-18 Identities = 123/169 (73%), Gaps = 5/169 (3%) Strand=Plus/Minus Query 252 CCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTT 311 ||||||||||| | || ||||||||| | ||||||||||| ||| |||||| Sbjct 37018 CCCACTGCTTGGAAGCTCACGGTTTCATGTTCTATTTCACTGATG-----GGGTTTCTTT 36964 Query 312 TCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAG 371 || |||||||||| | ||||| || |||||||| | ||| |||||||||||||| | Sbjct 36963 TCACCTTTCCCTCGGGATACTACGTCGCTATCGGTTATCCAGGAGTATTTAGCCTTGTAA 36904 Query 372 GATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | |||||| | ||||| | || | ||||| || | ||||||| Sbjct 36903 GGTGGTCCTTGCTGATTCACATGGGATTCCACGTGCCCCATGCTACTCG 36855 >seq6 Length=78779235 Score = 82.4 bits (90), Expect = 2e-13 Identities = 84/109 (77%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 273 GTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTA-- 330 |||||| | |||||| || ||||| |||||||||||| ||||||||||| |||| Sbjct 43343688 GTTTCATGTTCTATTGCAGCCCCCTAATGGGGGTTCTTTTCACCTTTCCCTCATGGTATG 43343629 Query 331 CTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379 || || || | ||||| ||| |||||||||||||| | | |||||| Sbjct 43343628 TTACTTTGCTGTTGGTCATCCAGGAGTATTTAGCCTTGCAAGGTGGTCC 43343580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241453590528